BAC Information

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BAC

Clone NameMSMg01-392M13
Chromosome18 (Build37)
Map Location 51,539,861 - 51,540,148
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392M13.T7 (MSMg01no392_m13.b1)MSMg01-392M13.TJ (MSMg01no392_m13.g1)
ACCAG494237AG494238
length804795
length of high quality
(start - end)
288 (74 - 361)327 (71 - 397)
definitionCHROMAT_FILE: MSMg01no392_m13.b1 PHD_FILE: MSMg01no392_m13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005CHROMAT_FILE: MSMg01no392_m13.g1 PHD_FILE: MSMg01no392_m13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCTATAATTTGCGGCCGCTAAACGAATCAAATTTCACAGACCATCCG
CGGAATTCTCTCTTTCCTCCCTGTTTGCCTGTTTTTTGATTAAAATGTTA
ATTGTATATTATTTGACTTTTTAAATTTTTTAAATTGTCATTACTTTTGG
AGTATTTCATGCTTGAGCACTGCATGTACATCATTACCAACCCTCCCTTT
CTCCCTTTCAACTACTCCATGCTCTCTTCCAAATTCAAGATCTATGTAAT
TACCATTGTATGAATATTTTTACATATGTATTATATATGCACACATGTAT
ATTTAACATGCTGAGTCATTTATANNTGCTGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTCTCCCTGCGTGTTTCGCGAGCCCCCCTTTTGGTCC
TGTTTTTCTTGCCCCCCCCCCCCTCCTTTTTCTCCTTTCCCCCCCCTGTT
TTTTCCGCCTCTTCCTCTTCTCCCCGCTCTCTTGCCTCCTTCCTCCGTTC
CCTCCCCGCTCCCTGTCCCCCCTCCTTTCCTCCTTCTTTTTTCCCTCCTT
CTCCCCCCCTTCTTTCCTTTCCCCCCCCCCCTCTCTTTTCCCCCCCCTCC
CCCTGTTCTTTCCCCCCCCCCCTCCTCCTTTCTCCCCTCCTCTCTTCTTC
TCCCCTCTCTTTTTTTTCTCTCTTTTCCTGTCCCGCTCGCCCCCTCCTGC
TCTCCTCTTCCTCGTTCTTTTCCCCTTCTTTCCCCCCCCTCTTCCTTTTT
TTCCTCTCCCCGCTCCCCCCCTCCCTTTTTTCCCTCTTCCCTCCTCCCCT
CCCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCACAGGGAGAAAAACAGAACCAAGTAATAT
GGACTCTTGGGGAATCTCAGAGACTGAACCACCAACTAAAGAACATAAAC
AAGATGGACCTAGGCCTCCTTGCACATATGTAGCAGATATGCAGCTTGGT
CTCTATGTAGGGCCTGAACAACTGGAGTGCAGGCTATCCTAAAAGCTTGT
ATGTGGGCTATACTCTTCTAGCTGGGCTGACTTGTCTGGCCTCAGCGGGA
GAGGATGCACCTGGCCTCATAGAGACTTAATGTGCCATAGTAGGGAGATA
GCTAGTGGGGATCCCACCTGCTCAAAGGAGAAGGGGAGGACAGATGGGGA
AGGATTAAGGCACCCTCAGCTTACTTCTCGTCTTCTTGTCCTCCCCCCGT
CCCTCCCCCCACCCCCCCCCCCTCCGCCCTGTTCGCCTCCCGCGCCTTCC
CCCCCTTCCCCCTCCTCCCCTCCCCCTTTCCCCCCTCCCCCCCTAGCCCT
TCCCCGCCTCCCCCTCCCTCCTCCTCCCCCCCCCGCTCTTCTCCCCCCCT
TCCCTCCCTGCCCTCCCCCCCCCCTCCTCCCTGTTCTGCCCTCCCCCCTC
TCTCCCCCCCTCTTGTCCTCTTTGCCCGCCCCCCGCCTTTTCTCCCCTCA
TGCCCCCCCCCCCAAACGCGTCTCTACCCCTCTTCCCTCCTCCCCCCCCT
CTCTCCCCTTCCCTCGCCGCCCTTCCTTTTCCCTTTTTTCCCGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_m13.b1 MSMg01no392_m13.b1 CHROMAT_FILE:
MSMg01no392_m13.b1 PHD_FILE: MSMg01no392_m13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:26 2005
         (288 letters)



>mm_chr18_51539700_51540387
          Length = 688

 Score =  530 bits (274), Expect = e-155
 Identities = 284/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgcctgttttttgattaaaatgttaattgtatattatttgactttttaaattttttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttgcctgttttttgattaaaatgttaattgtatattatttgactttttaaattttttaa 390

                                                                       
Query: 61  attgtcattacttttggagtatttcatgcttgagcactgcatgtacatcattaccaaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attgtcattacttttggagtatttcatgcttgagcactgcatgtacatcattaccaaccc 330

                                                                       
Query: 121 tccctttctccctttcaactactccatgctctcttccaaattcaagatctatgtaattac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tccctttctccctttcaactactccatgctctcttccaaattcaagatctatgtaattac 270

                                                                       
Query: 181 cattgtatgaatatttttacatatgtattatatatgcacacatgtatatttaacatgctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 cattgtatgaatatttttacatatgtattatatatgcacacatgtatatttaacatgctg 210

                                                           
Query: 241 agtcatttatanntgctggtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 288
           ||||||||| |  ||||||||| |||||||||||||||||||||||||
Sbjct: 209 agtcatttagatttgctggtgtttgtgtgtgtgtgtgtgtgtgtgtgt 162


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)