BAC Information

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BAC

Clone NameMSMg01-392N20
Chromosome18 (Build37)
Map Location 57,794,823 - 57,795,243
singlet/doubletsinglet
Overlap gene1700011I03Rik, 2210409D07Rik
Upstream geneLmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1, 4930511M06Rik
Downstream geneSlc12a2, 9330166H04Rik, Fbn2, Slc27a6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-392N20.T7 (MSMg01no392_n20.b1)MSMg01-392N20.TJ (MSMg01no392_n20.g1)
ACCAG494299AG494300
length805678
length of high quality
(start - end)
421 (74 - 494)---
definitionCHROMAT_FILE: MSMg01no392_n20.b1 PHD_FILE: MSMg01no392_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:32 2005CHROMAT_FILE: MSMg01no392_n20.g1 PHD_FILE: MSMg01no392_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:37:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CNGGAATTCAAAAATTTGCTTCTAAAATCCAAAAGCAACCAAATTGAAAA
AAAAAAAGCAAAAAATTAAAAAACACCAACAGTTAAAAAAACCACTCAGA
AACAAGCACCAAACCAAGTCAAAATAAAACAGAAACATCAAAACTCTGAC
AGGCGGGGATGAACATTAAGACTCTTTGTGAGGTCCTGATATCAGTCAAT
CTCTTTGACCTTTGCGGACATACTTGAGTGAGTTTTCTCATGTTCTGGGA
AGTTTGGAGGATAAGCCTAGAGCATCCATCTGGATAGCTGTTCCTGAGTA
AGACAGAGTCCAAAATGATGTGTTCTTTGGAGTGTTTATTTCTCAGGTTT
CATTTATAGAGGCAGAGATTCACCTCACATCCTTGGCTTGTCTGGAACTT
ATTTTGTGGCTGTTAATAGAACTCATAAGAACTCAGGACTTCTAGATAAC
CAGGTCCTGAGCAAACAGGGCTATGAACAGGGTAGGAAACCCATCAAGGC
CCCCGCCACCTAGGCTTCAAGGTAGCTCTACCAAGCCTTCCTTTCCTATC
CAGCGCCTCTGTGACAGCTGGCCAGAAGCCTAAAACCCGCTCCCCAACCC
CGGGCATGTAGCCAAACCGAAAAATTACCCCGTGCTCCCCTGGGTGGGAC
CCACAGTTTTGTTTCCCCCCCGTTCCCCCCTACTCTCTAATTCCCCCCCG
TCTACCCCCTTTCCCCCATTCTCTCATCTCCACATTCCCACCCCTCACCT
CCCCN
NCCCCCCCCCNNNCCCCCCCCCCTCCCCCCNNCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCNCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCN
CCCNCCCCCCCCCCCCCCCCCCCCNCCTNCTCCCCCCNCCCCCCCCCCTC
CCCCCCNCCCCCCCCNCCCCCCCCCCNNCCCCCCCCNNCCNNNCCCCCTC
CTATCCCCCCCCCTCNNNNCCCCCCCTCNNCTTTTTCTCNCCCTCCTCCC
TTNACCCTCTCNNAACNTTTCTCCCCCACCTCCCTAACTTNACATTCCNA
NCTTCCTNATCTCTTTTCCCCCCCTCCCCTAAAACCCTTTTCCATTCCAC
CTCCACCAACCCCCCTTCCCCTCTCACCCTCCCNNNCCCTTCATTCCCTT
TCTCCTTTTTTTTTCCCCCCAACCTCCAAACCCCCCCATCCACTTTCTTT
CCCCCCCTCCCTCCTTTTCCTCTTTTTCTCCCCCCCTTCTTTTCCCCCCC
CTTCTTCCTTTTTTCCCCTCTTTTTCCCCCCCTCCCCTTTTTTTTTCTTT
TTACTTCCCCTTCCNCCCCCTTCCCCTCCCCTCTCTTCCTTTTTTTTTCT
CTTCCNNNNATCNCCNTTCTCCCNNNNNNCNNCTCCCTCCTTCCCCCCTT
TTTTCCCCCCCCTTTTTCCTCTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no392_n20.b1 MSMg01no392_n20.b1 CHROMAT_FILE:
MSMg01no392_n20.b1 PHD_FILE: MSMg01no392_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:37:32 2005
         (421 letters)



>mm_chr18_57794623_57795443
          Length = 821

 Score =  762 bits (394), Expect = 0.0
 Identities = 415/422 (98%), Gaps = 2/422 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaatccaaaagcaaccaaattgaaaaaaaaaaagc-aaaaaattaaaaaacaccaacag 59
           |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 621 aaaatccaaaagcaaccaaattgaaaaaaaaaaagcaaaaaaattcaaaaacaccaacag 562

                                                                       
Query: 60  ttaaaaaaaccactcagaaacaagcaccaaaccaagtcaaaataaaacagaaacatcaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttaaaaaaaccactcagaaacaagcaccaaaccaagtcaaaataaaacagaaacatcaaa 502

                                                                       
Query: 120 actctgacaggcggggatgaacattaagactctttgtgaggtcctgatatcagtcaatct 179
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctgacaggc-gggatgaacattaagactctttgtgaggtcctgatatcagtcaatct 443

                                                                       
Query: 180 ctttgacctttgcggacatacttgagtgagttttctcatgttctgggaagtttggaggat 239
           |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 442 ctttgacctttgcggacatacttgagtgagttttctcatgctctgggaagttgggaggat 383

                                                                       
Query: 240 aagcctagagcatccatctggatagctgttcctgagtaagacagagtccaaaatgatgtg 299
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 382 aagcctagagcatccatctggatagctgttcctgagtatgacagagtccaaaatgatgtg 323

                                                                       
Query: 300 ttctttggagtgtttatttctcaggtttcatttatagaggcagagattcacctcacatcc 359
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttctttggagtgtttatttttcaggtttcatttatagaggcagagattcacctcacatcc 263

                                                                       
Query: 360 ttggcttgtctggaacttattttgtggctgttaatagaactcataagaactcaggacttc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttggcttgtctggaacttattttgtggctgttaatagaactcataagaactcaggacttc 203

             
Query: 420 ta 421
           ||
Sbjct: 202 ta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)