BAC Information

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BAC

Clone NameMSMg01-393F19
Chromosome18 (Build37)
Map Location 59,843,129 - 60,003,545
singlet/doubletdoublet
Overlap geneLOC667549
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik
Downstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393F19.T7 (MSMg01no393_f19.b1)MSMg01-393F19.TJ (MSMg01no393_f19.g1)
ACCAG494678AG494679
length764777
length of high quality
(start - end)		429 (36 - 464)460 (67 - 526)
definitionCHROMAT_FILE: MSMg01no393_f19.b1 PHD_FILE: MSMg01no393_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:16 2005CHROMAT_FILE: MSMg01no393_f19.g1 PHD_FILE: MSMg01no393_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,003,152 - 60,003,545)(59,843,129 - 59,843,588)
sequence
CATGTCACTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGA
TGATGTCACTCCTCAGTGACAAGGACGCACCATGAATCTGTTGCCATGGC
AACCACCACACATTCCCAGCATACACTTCACCTGCGTGCTGCTTCATCTG
TGCGCTGTAGTGCGCGCGTGATTACGTCATGGCCAGAATAAAAGGCAGAA
ACTCCAAACCCCTTGCCCCTTCCCCTCTTCTTCTCCCCCTTCTCCCTCTT
CTCTTCCCTGTTTCCTCTCCAATAAAGCTCTTCTTGTGGAGCTCTGCTGG
CCTGGTGTGATCTGTCCAGATACGGGCCTCCTTCTAACACAACAGTAACA
GGAGCCACCCTGTCTAGTGAAAAGTTGGCAATGTATCCGCAAAGAAGAGT
TCTCTTCAAGGACGCAGAGCCTTGTGAGTTGAAGGTAGGCAAAGAAAGTT
TCGAAGCATGTGGCAGATACTAGTGCATTCTGCTGCCTTATCCTAGTTTC
TGGCCTCTGCTGCTCCTCAACAGCTGTCCTGTTTCTACTGCAGCCAAATG
CTTACAAGAAAAGCTGCTGGGAAGAGACCCGCTCACCTGTGGAGAACTGC
TCCCCCTATAAGTTTAAGGGTAGCATTTCCCTCCCTGAAAAATTTGAAAA
AAAACCTGGGAGGGGGGAGAATTTTTTTTTCATTGTAACCCCGAGGGGAA
ATCACCCCTCCCAAATTCCTTAAGAAATGGAAGGAATTCCCAGTGGGGGA
AATATTTTTTGTGG

GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACTTGAACTAAAATTAGGAGCTCAGCATAGAAAA
TCAATGAAACCAAAAGTCTAGACCTTAAAAGGACCAATTAAAATGAATAA
ACCTCTAGTTTGGCTAGGAAAAGAAAAGGTTAACTGCTATCAGAATAATA
GAAAACAATGTATTTAAACCAATTATTTATCAGGGTCTGGGTGGGATTGA
GTCCAAGAATGCAAAATTATTTAGCATACAAACAGAAGAAGGAATTCCCC
AGAGTGAGCATGGGAATACTATGCACAGAACCATACCTGCCAGGCTCGGA
ATGAGGACAGTGCTCATGGATCAACTGCCCTGTCATACTCAGTAGGATGG
CAACACTGAACATGGGGGAACCTGGAGCTGTCATACTTGAGAACTGAGTT
CTGCACATAAACCACTTTCATATGTCATAATTGTGAAGGCATTGCACCAA
TCTACTAAGGGATAAAGATGAGGGATAGAAAAATAANCAGATGGAATGTG
GCACCTGTTTCCGATTTCTATTTATATCNNAGAGAACNAAACCCCAGACC
CNTTAATATTTACTGACTTATCACATCCTGTTGAAATTTCTTAAAGCCCA
TGAACCCCTATTGGATAACCCCCCTTTTTTCTCCCATATGAAATGAAAAA
AAACCAAATGAGGCTTTTTCCCCCCTCTCAAAGGTCTTTTATGAACACCA
AACGGCTTAAAAAAAACCCCCGGGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_f19.b1 MSMg01no393_f19.b1 CHROMAT_FILE:
MSMg01no393_f19.b1 PHD_FILE: MSMg01no393_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:16 2005
         (429 letters)



>mm_chr18_60002717_60003545
          Length = 829

 Score =  700 bits (362), Expect = 0.0
 Identities = 386/394 (97%)
 Strand = Plus / Minus

                                                                       
Query: 36  aaggacgcaccatgaatctgttgccatggcaaccaccacacattcccagcatacacttca 95
           |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaggacacaccatgcatctgttgccatggcaaccaccacacattcccagcatacacttca 770

                                                                       
Query: 96  cctgcgtgctgcttcatctgtgcgctgtagtgcgcgcgtgattacgtcatggccagaata 155
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 769 cctgcgtgctgcttcatctgtgcgctgtagtgcgtgcgtgattatgtcatggccagaata 710

                                                                       
Query: 156 aaaggcagaaactccaaaccccttgccccttcccctcttcttctcccccttctccctctt 215
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 709 aaaggcagaaactccaaaccccttgccccttcccctcttcttctccctcttctccctctt 650

                                                                       
Query: 216 ctcttccctgtttcctctccaataaagctcttcttgtggagctctgctggcctggtgtga 275
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 649 ctcttccctgtttcctctccaataaacctcttcttgtggagctctgttggcctggtgtga 590

                                                                       
Query: 276 tctgtccagatacgggcctccttctaacacaacagtaacaggagccaccctgtctagtga 335
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 589 tctgtccagatacgggcctccttctaacacaacagtaacaggagccaccctgtctagcga 530

                                                                       
Query: 336 aaagttggcaatgtatccgcaaagaagagttctcttcaaggacgcagagccttgtgagtt 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaagttggcaatgtatccgcaaagaagagttctcttcaaggacgcagagccttgtgagtt 470

                                             
Query: 396 gaaggtaggcaaagaaagtttcgaagcatgtggc 429
           ||||||||||||||||||||||||||||||||||
Sbjct: 469 gaaggtaggcaaagaaagtttcgaagcatgtggc 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no393_f19.g1 MSMg01no393_f19.g1 CHROMAT_FILE:
MSMg01no393_f19.g1 PHD_FILE: MSMg01no393_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:16 2005
         (460 letters)



>mm_chr18_59842929_59843788
          Length = 860

 Score =  890 bits (460), Expect = 0.0
 Identities = 460/460 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttgaactaaaattaggagctcagcatagaaaatcaatgaaaccaaaagtctagacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttgaactaaaattaggagctcagcatagaaaatcaatgaaaccaaaagtctagacctt 260

                                                                       
Query: 61  aaaaggaccaattaaaatgaataaacctctagtttggctaggaaaagaaaaggttaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggaccaattaaaatgaataaacctctagtttggctaggaaaagaaaaggttaactg 320

                                                                       
Query: 121 ctatcagaataatagaaaacaatgtatttaaaccaattatttatcagggtctgggtggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatcagaataatagaaaacaatgtatttaaaccaattatttatcagggtctgggtggga 380

                                                                       
Query: 181 ttgagtccaagaatgcaaaattatttagcatacaaacagaagaaggaattccccagagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgagtccaagaatgcaaaattatttagcatacaaacagaagaaggaattccccagagtg 440

                                                                       
Query: 241 agcatgggaatactatgcacagaaccatacctgccaggctcggaatgaggacagtgctca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcatgggaatactatgcacagaaccatacctgccaggctcggaatgaggacagtgctca 500

                                                                       
Query: 301 tggatcaactgccctgtcatactcagtaggatggcaacactgaacatgggggaacctgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggatcaactgccctgtcatactcagtaggatggcaacactgaacatgggggaacctgga 560

                                                                       
Query: 361 gctgtcatacttgagaactgagttctgcacataaaccactttcatatgtcataattgtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctgtcatacttgagaactgagttctgcacataaaccactttcatatgtcataattgtga 620

                                                   
Query: 421 aggcattgcaccaatctactaagggataaagatgagggat 460
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggcattgcaccaatctactaagggataaagatgagggat 660


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 860
Length adjustment: 10
Effective length of query: 450
Effective length of database: 850
Effective search space:   382500
Effective search space used:   382500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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