BAC Information

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BAC

Clone NameMSMg01-393M19
Chromosome18 (Build37)
Map Location 47,058,352 - 47,058,465
singlet/doubletsinglet
Overlap gene4833403I15Rik
Upstream geneTrim36, LOC100042905, Pggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, LOC666798
Downstream geneGm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393M19.T7 (MSMg01no393_m19.b1)MSMg01-393M19.TJ (MSMg01no393_m19.g1)
ACCAG495008AG495009
length898823
length of high quality
(start - end)
---114 (68 - 181)
definitionCHROMAT_FILE: MSMg01no393_m19.b1 PHD_FILE: MSMg01no393_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:55 2005CHROMAT_FILE: MSMg01no393_m19.g1 PHD_FILE: MSMg01no393_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:38:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGTTGAGAATTNNAGGGGGGAGTGATGTTAATCGAATATATCGAATAAAC
TTATCTCCATCTCTATCAATTCTATAATAAACAAATGTAATACCCTCTTC
CATCTCTTTTCTGTTGTCGCGGCCACCATAATCTCTAAAACAAAAAATTT
TTTGGTTCGGGGGGGGCGCGCGGCTTTNAAAATAACGGGAACCTTCCAAC
CCTAAATTAAGGTTTTTCTCCACCAAGAGGAGAAAATACCCGGGGGGGCG
GGGGAAAAAATATTTTCTCTTTTAAAAGGGGNNCCAATATTTTGTGTTCC
CCGCGGGAAAGAGGGNNGAGAAGCCCTAGGAAAAAAAAACCAATTTTGTG
GGGAAANAAAATATAAAAACGTGGCGTATTTGGGGGGGGGGGAAAAAAAA
AAAAAANAAGGGGGGTGGGGAAGAGCCACCAAAAATAAAAATAATCTCCC
CCCCCCCATTCCTCCCCAAAAAAAAAGGGGGGGGCGCTCCCCCCCTCCGG
CGCGGAAGAAAAAAATTAAAGAAAAGAAAANTTNNTNTATAAAAGAAAGA
AAAAACGCCCCCCCCCCTCCTTTTTTTTCTTTTTTATTAAAAAAGAGGGG
GGGGGGAGAAACGAATTTNNNNNTTTNGGGGGGGGAAAAAAAAAGGGGGG
GGGGAAATTNTTCTTCTCNCCCAACACCCCCNCCCNNCCNNNNNATTCGT
TGGGTGGGGGGGCCGCCCCGGCGNCGGGGGGGAGAAAAAAAAAAAAAAAA
AATATATAAGNCGAGGGGAGAAGAAAAAAAATACCCCCGCGCCCTCGCCC
TCAAAGAAATAACAACCACACCGCCCTGCGCTTTGTTTTTGTTGTTTTTT
GCGCACAGGACTAATCTCGCGAACGCAACACAAACCACAAGATATGTN
NXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTAAAAAGCAAAAATAAAAACAAAAACTCCT
AAGTGAGTCTCATTATCTCCATGAAGTTTGTAGAATTGTAAGTGCCCGAA
CTGTTCATGCCTGGGCTCATTACTTTTATATTTTATCCGGGGTGTGTGAG
AGATGGGTGTCGAGATAGTNNNNNNANNNNNNNNNNNNNNCTCTCCTTTC
CCCCCCCCCAAAAAAATTTTTTTTTACCCCCCCACAAAGGGTTTTTCACA
AATAAAACCCTTTTATTTTAAGGTTAATTAAANAAATAACATTTTCNNNN
TTTATAACCACAATTTATTNCTGCACACCTACNCCCNNGNNNNNNNNNNN
NNNNNNNNNNCNNNNCCTCNNCCCCCNNNNNCTNNNNNNNCCNNNNNNCC
CNNCCCCCCTCTCTCCTCNNNNNTTNNNNNNTCCNCCTTCTTCNNCNCCT
TTTNTCTCCNCCCCCCCTNNCNTCCCTNCTTTCCCNNCNCTTNNNNCNCC
CCCTCTCCCCCNTCCTTTNNNTNNNNCNNNTNTNTTTTNCTCCCCCCCNN
CCCNNCCCCNNNNNNNCCCCNNTTCNTNNNNNTTNCCCNTTNCCNNNCCC
TCTTNTNNCCNCNNNNNNTTNNTNNTTTCCTTTCCCCCNCTTCCTTNNNC
CCNCNNNNCTCCCCTCCCCNNNNTCCNNCNCTTCTNNTTCNTTTTCNNCC
CNCTCCCCTTCNNCNCTCCCCCCCCCCTCTTCCTTNTTTCTNTTCTTCCA
ATTTTTTCTTTCCTTCTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_m19.g1 MSMg01no393_m19.g1 CHROMAT_FILE:
MSMg01no393_m19.g1 PHD_FILE: MSMg01no393_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:55 2005
         (114 letters)



>mm_chr18_47058152_47058665
          Length = 514

 Score =  221 bits (114), Expect = 1e-62
 Identities = 114/114 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttaaaaagcaaaaataaaaacaaaaactcctaagtgagtctcattatctccatgaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttaaaaagcaaaaataaaaacaaaaactcctaagtgagtctcattatctccatgaagt 260

                                                                 
Query: 61  ttgtagaattgtaagtgcccgaactgttcatgcctgggctcattacttttatat 114
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtagaattgtaagtgcccgaactgttcatgcctgggctcattacttttatat 314


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 114
Length of database: 514
Length adjustment: 8
Effective length of query: 106
Effective length of database: 506
Effective search space:    53636
Effective search space used:    53636
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)