Query= MSMg01no393_n05.b1 MSMg01no393_n05.b1 CHROMAT_FILE:
MSMg01no393_n05.b1 PHD_FILE: MSMg01no393_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:57 2005
(495 letters)
>mm_chr18_71569620_71570513
Length = 894
Score = 872 bits (451), Expect = 0.0
Identities = 481/493 (97%), Gaps = 5/493 (1%)
Strand = Plus / Plus
Query: 3 cggaattctctccttcttgctttctctaccatgaaatgacttatttttattgagcctcca 62
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 cggaatcctctccttcttgctttctctaccatgaaatgacttatttttattgagcctcca 266
Query: 63 gagtctcgattttttacttcaggtaaaaaaaaaaaaaaaaaaaacattttccataattat 122
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 267 gagtctcgattttttacttcaggt----aaaaaaaaaaaaaaaacattttccataattat 322
Query: 123 tcctataatttttttccaaaaaataccaagcagaactttgttaagcaacacctatagtgc 182
|||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 323 tcctataattcttttcc-aaaaataccaagtagaactttgttaagcaacacctatagtgc 381
Query: 183 actacatttcaaaataacaacatgtccaccccatggtgctgctcattcatttttattcat 242
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actacatttcaaaataataacatgtccaccccatggtgctgctcattcatttttattcat 441
Query: 243 gtatgttgactcttcttgatgctaccaaagtggattgattttttttcttatttaaaatgt 302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 442 gtatgttgactcttcttgatgctaccaaagtgaattgattttttttcttatttaaaatgt 501
Query: 303 ttgcatgtcataaactcaaaacttttatattatatgcatgaagagatacttttgatggga 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttgcatgtcataaactcaaaacttttatattatatgcatgaagagatacttttgatggga 561
Query: 363 gcatacagagctaacatgtaatttatactgaactcactgagtttcagatgcactctggga 422
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 562 gcatgcagagctaacatgtaatttatactgaactcactgagtttcagattcactctggga 621
Query: 423 gttataaaggttcatttctccacaggctaaaagacccgtttctaaaagcattcaagttaa 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gttataaaggttcatttctccacaggctaaaagacccgtttctaaaagcattcaagttaa 681
Query: 483 atttacccctgaa 495
|||||||||||||
Sbjct: 682 atttacccctgaa 694
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 894
Length adjustment: 10
Effective length of query: 485
Effective length of database: 884
Effective search space: 428740
Effective search space used: 428740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no393_n05.g1 MSMg01no393_n05.g1 CHROMAT_FILE:
MSMg01no393_n05.g1 PHD_FILE: MSMg01no393_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:38:57 2005
(430 letters)
>mm_chr18_71707826_71708654
Length = 829
Score = 762 bits (394), Expect = 0.0
Identities = 421/430 (97%), Gaps = 1/430 (0%)
Strand = Plus / Minus
Query: 1 attgggagaatctggttcaagtgttgactttagtagctcagaccaagatggataaccata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 attgggagaatctggttcaagtgttgactttagtagctcagaccaagatggataaccata 570
Query: 61 tcctgtgcccagagatatttcttatcacgactcagtctgagaatgatctgtttgtattta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tcctgtgcccagagatatttcttatcacgactcagtctgagaatgatctgtttgtattta 510
Query: 121 gctgcattattcaagctgccctttccactctcagatagatgtggatgttttatagtgttc 180
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 509 gcggcattattcaagctgccctttccactctcagatagatgtagatgttttatagtgttc 450
Query: 181 tgtcttctctccacccttacactgtgaccatgtattttctggaactactctcagaagcat 240
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 449 tgtcttctctccacccttacactgtgaccatctatttcctggaactactctcagaagcat 390
Query: 241 atactccccaatcacaatggatttttatattttatctattgatttaatataaatctaaaa 300
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atactccccaatcacactggatttttatattttatctattgatttaatataaatctaaaa 330
Query: 301 agagacatatgagtttttcaagaagaaaagcagtaaataactcttcaaataaataagtaa 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 329 agagacatatgagtttttcaagaagaatagcagtaaataactcttcaaataaataagtaa 270
Query: 361 aatgtaatagtgacattttaccattaatgtatatagaatatgcatggactattgagacac 420
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 269 aatgtaatagtgacatttgaccattaatgtatatagaatatgcatg-actattgagatac 211
Query: 421 ttactcccaa 430
||||||||||
Sbjct: 210 ttactcccaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space: 345220
Effective search space used: 345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
