BAC Information

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BAC

Clone NameMSMg01-393O22
Chromosome18 (Build37)
Map Location 4,875,193 - 4,875,586
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988
Downstream geneSvil, Zfp438, LOC100039442, Zeb1, EG664925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-393O22.T7 (MSMg01no393_o22.b1)MSMg01-393O22.TJ (MSMg01no393_o22.g1)
ACCAG495109AG495110
length784780
length of high quality
(start - end)		398 (40 - 437)377 (71 - 447)
definitionCHROMAT_FILE: MSMg01no393_o22.b1 PHD_FILE: MSMg01no393_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:07 2005CHROMAT_FILE: MSMg01no393_o22.g1 PHD_FILE: MSMg01no393_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATCCGCGGAATTC
ACTTTGTTTCTGCTTCTGTCCACAGACTCTGCCATTTCTTTGCTCTGAGG
CAGAGCATCAAGGTGGATGTATGTGGAAAAGTAAAGCCATTATCTCATAG
TGACCAAGAGCATAAGAAAGAGACAAAGTCTAGCTTGCTAAAGCATGGAG
CTAATGGTCTACTTCCTCTTGTTTTTTTCTACCCTTTCCAATAACATTTT
GAATCCATATTAGATCCATGTCTAATGGTCTCTCATGATGACTAGGTAGG
GACCAAACCTTTATTCAACATATGAAACATTTTTGGGGACATTTCACATC
CAAAGCCTAGAGGAAGCAAAAGGAAAGACCCGCAAAGGCAGGGTTTCACT
TCGAAAAAACCTTTATACTTTATATAAATTTATAATAAACATTTGCCACC
AACGTAGAGAAGTATAGTGGGCTATGTAGTATATTCTTACCCCAATTCTT
GTTCACTGGAGCCTTGGGATATGATCTTGGTTTGAAAGAAAGTATTTTGA
ACTTGTTTACGATCCCTGAGTAAAAGTACCCCGGGACTGGGACCCACCCC
AAAATCCACGGCTGGGACCTATTAAAAGGAAAAGGCCCCCTTAACCTTAA
GGGGGGTGGGAGGTTTTTATGGTTCAAATTCCCCTTATTGGTTTCCCTGG
GTTCCCTAAACTTAAATTTCTCTTTATTAATTTATAATAACCTATCGGCC
TACTTCGTGAATAAAAAATCTCCCCATATAGCGG

ATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTAAACATGATAAACAGCTTCAGTGCAGTA
GCTGGATATAAAATTAATTCAAACAAATCAGTGGCCTTTCTCTACCCAAA
GGATAAACAGGATGAGAAAGAAATTATGGAGACAACACCCTTCACAATAG
TCACAAATAATATAAAATATTTTGGTGTGACTCTAACTAAGGAAGTGAAA
GATCTGTATGATAAGAACTTCAAGTCTTTGAAAAAAGAAATCAAAGAAGA
TCACAGAAGATGGAAAGATCTCTCATGCTCATGGATGGCAGGATTAATAT
AGTAAAAATGGCTATCCTGCCGAAAGCAATCTACAGATTCAATGCAATCA
TCATCAAAATTCCAACTAAATTCTTCACAGAGTTAGAAAGGGCAATTTGC
AAATTCATCTGGGATAACAAAAATCCTAGGATAGCAAAAACTCTTCTCAA
NCATAAAAGAACCTCTGGGGGAATCACCATGCCTGACCTTCAGCTGTACT
ACAGAGCAATTGTGAAAAAAACTGCATTGAACTGGTACAAGGACAGTCCG
GTAGAAACATGGAAAAAAATTGAGGCCCCGAATTGACCTACCCCCTATGG
GCCCTTGATCTTTGAAAGGGAGCAAACCCCCCCGGGGAAAAAAAAGAATT
TTCACAAAAAGGCTGGGCCCCGCGGGGTTTTATGTTAAAAAGGGAAAGGG
CTTTCTTTTCTTTGTTAAGGCCACCTAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no393_o22.b1 MSMg01no393_o22.b1 CHROMAT_FILE:
MSMg01no393_o22.b1 PHD_FILE: MSMg01no393_o22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:07 2005
         (398 letters)



>mm_chr18_4874989_4875786
          Length = 798

 Score =  716 bits (370), Expect = 0.0
 Identities = 388/394 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcactttgtttctgcttctgtccacagactctgccatttctttgctctgaggcag 64
           ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct: 598 ggaattcactttgtttctgtttctgtccacagactctgccgtttctttgctctgaggcag 539

                                                                       
Query: 65  agcatcaaggtggatgtatgtggaaaagtaaagccattatctcatagtgaccaagagcat 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 538 agcatcaaggtggatgtatgtggaaaagtaaagcaattatctcatagtgaccaagagcat 479

                                                                       
Query: 125 aagaaagagacaaagtctagcttgctaaagcatggagctaatggtctacttcctcttgtt 184
           |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||
Sbjct: 478 aagaaagagacaaagtctagcttgctaaagcatggtcctaatggtctacttcctcttgtt 419

                                                                       
Query: 185 tttttctaccctttccaataacattttgaatccatattagatccatgtctaatggtctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttttctaccctttccaataacattttgaatccatattagatccatgtctaatggtctct 359

                                                                       
Query: 245 catgatgactaggtagggaccaaacctttattcaacatatgaaacatttttggggacatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catgatgactaggtagggaccaaacctttattcaacatatgaaacatttttggggacatt 299

                                                                       
Query: 305 tcacatccaaagcctagaggaagcaaaaggaaagacccgcaaaggcagggtttcacttcg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcacatccaaagcctagaggaagcaaaaggaaagacccgcaaaggcagggtttcacttcg 239

                                             
Query: 365 aaaaaacctttatactttatataaatttataata 398
           ||| ||||||||||||||||||||||||||||||
Sbjct: 238 aaagaacctttatactttatataaatttataata 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 398
Length of database: 798
Length adjustment: 9
Effective length of query: 389
Effective length of database: 789
Effective search space:   306921
Effective search space used:   306921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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