BAC Information

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BAC

Clone NameMSMg01-394A09
Chromosome18 (Build37)
Map Location 63,359,172 - 63,359,611
singlet/doubletsinglet
Overlap gene9030411M15Rik
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-394A09.T7 (MSMg01no394_a09.b1)MSMg01-394A09.TJ (MSMg01no394_a09.g1)
ACCAG495178AG495179
length768785
length of high quality
(start - end)
442 (57 - 498)345 (84 - 428)
definitionCHROMAT_FILE: MSMg01no394_a09.b1 PHD_FILE: MSMg01no394_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:15 2005CHROMAT_FILE: MSMg01no394_a09.g1 PHD_FILE: MSMg01no394_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:39:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTCCACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCAAAGACTTACCTCCTGTGTCAATAAAAATGAAGG
GGGAGAAAGGGAAAGAAAGCAGGTGGGGAGAAGAGACTTCATTCATTGCC
ATACAACCCTCTTCCAACCGGTTTGTGTGAAAGGGACGCCAGCATTTATA
TTTTGAAGACAGAAGGAAGAGGGGAGCTTTGCACTGGGTCATGGGGTCAC
ACACCCAGGCAAAAGAGGCAGGCTCCACACTTTTTAGATGCCTTTCCTTT
GTTTCCTTACATTGTTGGCCCCCAAAACACCTATGTGTGGGGCCTCTGAT
TCAGGCACAGGAACTTAAATGGCTGAGGAGGGCAATAAGTGAAGCGCAGT
ATCCAGACCTCTCTTAGGGAACTCGTTATCTGTGGAGGAGCCAATGATGT
GCAGGGCGCCCCGCAGGTCACTGGAACAATGCTGATGTAACCTGGCTTGC
AACAGAGAAGCCGTTTCTCCGGGATCATGCTTTTTTACTGATAAATATTG
AGAAGATGACTTTCACGCACCACAATGTCCGAGTTACCTCTTGTCCCACG
GCAGGGATCCCTGAGATCTTATTTCGTATTACCTGATAACTTTCCTTACT
CCCCCGGCTTTAAGAAGTCCTCCCTTTCCTAGGGAAAATTTTTCCATATT
AATGTTCCATTTCACCCTTCACGTGAAGGCAAGACTCCCCTTTCCCTCTA
ATTTTTTCATGACCCTTA
CTTTTCTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCTCAGAAGGTAGAT
TTGGTTTGGTGATGATGGTGCAGAATCCCCCTTTAATGCATGTTTTTCAG
GGTTCTGGTATGTAAATGAAGTTACTGAATGATTCTCTAACATGACCGTA
TAGCTAAGCACCTGAGGGCTTTAAAAATATATGTAGTGTGGACCCATACC
AGACTAATTAAGTCAGAGTTTCAGGCAGTGTGGAGACTGCCTGTTAGGAT
TTTCACAAAGCTCTGCAGGCAGTTCCAACTAGAGCCAGAACAGAGTACTC
CAATCCGACCTTGTCTAGACATCTGGAACTTCCTCTTCAGGGCAGATGTT
GGAAGTCTAGTTAGCAGCCATTGTGGCAGAGAAAGCAAGAAGTGGACTTG
GCAAGACATCTGCATGTCCTGCTATGTCTCCACGTACTCATCTCAAAGTA
TGGATTTTGAGGAACTTACATCGTTGATGTTCTGGTCAAGCCATACTATC
ACCCCGGAACATCACTCCGAGAAAACAAGATGCATGCCCTTGATTTCCCG
CTTTTTTTTTTTCCTATGCCTCCTGCTTTCTTCATTTACTCCCCTACCCC
TCTCTTTTCCCCGCCTCTTCCCCGATTACCTTTTCCCTGGCATGACTTAT
CCCCCCCTTCCTTTCCTTAATACTTTATCCTCCTTTTTCTCTTCCTCCTC
TTTTTCCCAATCCTCCCCTTTTCTTGTTTTTCCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no394_a09.b1 MSMg01no394_a09.b1 CHROMAT_FILE:
MSMg01no394_a09.b1 PHD_FILE: MSMg01no394_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:15 2005
         (442 letters)



>mm_chr18_63358969_63359811
          Length = 843

 Score =  752 bits (389), Expect = 0.0
 Identities = 428/441 (97%), Gaps = 3/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagacttacctcctgtgtcaa-taaaa-atgaagggggagaaagggaaagaa 61
           |||||||||||||| |||||| ||||||| ||||| | |||||||||||||| |||||||
Sbjct: 204 ggaattcaaagactgacctccagtgtcaattaaaaca-gaagggggagaaagagaaagaa 262

                                                                       
Query: 62  agcaggtggggagaagagacttcattcattgccatacaaccctcttccaaccggtttgtg 121
           ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 263 agcaggtggggagaagagacttcattccttgccatacaaccctcttccaacctgtttgtg 322

                                                                       
Query: 122 tgaaagggacgccagcatttatattttgaagacagaaggaagaggggagctttgcactgg 181
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 323 tgaaagggacgccagcatttatattttgaagacagaaggaaggggggagctttgcactgg 382

                                                                       
Query: 182 gtcatggggtcacacacccaggcaaaagaggcaggctccacactttttagatgcctttcc 241
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 383 gtcatggggtcacacacccaggcaaaagaggcaggctccacacttcctagatgcctttcc 442

                                                                       
Query: 242 tttgtttccttacattgttggcccccaaaacacctatgtgtggggcctctgattcaggca 301
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 443 tttgtttccttacattgttggcccccaaaacacctatgggtggggcctctgattcaggca 502

                                                                       
Query: 302 caggaacttaaatggctgaggagggcaataagtgaagcgcagtatccagacctctcttag 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 caggaacttaaatggctgaggagggcaataagtgaagcgcagtatccagacctctcttag 562

                                                                       
Query: 362 ggaactcgttatctgtggaggagccaatgatgtgcagggcgccccgcaggtcactggaac 421
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 563 ggaactcgttatctgtggaggagccaatgatgtgcagggcgccccacaggtcactggaac 622

                                
Query: 422 aatgctgatgtaacctggctt 442
           |||||||||||||||||||||
Sbjct: 623 aatgctgatgtaacctggctt 643


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 843
Length adjustment: 9
Effective length of query: 433
Effective length of database: 834
Effective search space:   361122
Effective search space used:   361122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)