Query= MSMg01no394_f23.b1 MSMg01no394_f23.b1 CHROMAT_FILE:
MSMg01no394_f23.b1 PHD_FILE: MSMg01no394_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:44 2005
(516 letters)
>mm_chr18_61028764_61029679
Length = 916
Score = 940 bits (486), Expect = 0.0
Identities = 504/510 (98%)
Strand = Plus / Minus
Query: 7 cggaattcactatgtaccccaggttggtctggaacctcagattgcctacctctgtctccc 66
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 815 cggaattcactatgtagaccaggttggcctggaacctcagattgcctacctctgtctccc 756
Query: 67 aagtgctaggattaaaagctcatatccctatgccaggctcttggtattttcttgacagtc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 aagtgctaggattaaaagctcatatccctatgccaggctcttggtattttcttgacagtc 696
Query: 127 tcatctcactttggtcccacccacccagaaacctaactgttggaaacttgggtaaactga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tcatctcactttggtcccacccacccagaaacctaactgttggaaacttgggtaaactga 636
Query: 187 acctcctcccatctgacctcccatgtcctgatctctccagttcaccgtggctctcgcttt 246
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 635 acctcctcccatctgaactcccatgtcctgacctctccagttcaccgtggctctcgcttt 576
Query: 247 gtgtgccaccacattgttccctctggtttgtgcttctttccctgtccccacctgcttctc 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtgtgccaccacattgttccctctggtttgtgcttctttccctgtccccacctgcttctc 516
Query: 307 tcgaagaacattctagaaagcctggtctggctagcccatttcattgtgcatcactatcta 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 tcgaagaacattctagaaagcctggtctggctagcccatttcattgtgcatcactatcta 456
Query: 367 ctgagccatagtgaatcagtatctaaagttccttctggaaggatagaggttcttttactt 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctgagccatagtgaatcagtatctaaagttccttctggaaggatagaggttcttttactt 396
Query: 427 cattctaaacctccaccagctgtctggacacaagtttgcacagagctaaatcgcacagta 486
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cattctaaacctccatcagctgtctggacacaagtttgcacagagctaaatcgcacagta 336
Query: 487 ggactggctgaatgtggtagtacatgcctt 516
||||||||||||||||||||||||||||||
Sbjct: 335 ggactggctgaatgtggtagtacatgcctt 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 916
Length adjustment: 10
Effective length of query: 506
Effective length of database: 906
Effective search space: 458436
Effective search space used: 458436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no394_f23.g1 MSMg01no394_f23.g1 CHROMAT_FILE:
MSMg01no394_f23.g1 PHD_FILE: MSMg01no394_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:39:44 2005
(469 letters)
>mm_chr18_60866883_60867751
Length = 869
Score = 779 bits (403), Expect = 0.0
Identities = 441/469 (94%), Gaps = 24/469 (5%)
Strand = Plus / Plus
Query: 1 cagaatacacatgcaaaatcctttcatatttaatacttcaacaaaatgttagatgcctct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaatacacatgcaaaatcctttcatatttaatacttcaacaaaatgttagatgcctct 260
Query: 61 tgtacatagtaagacagcaattggctgaagtggggatcaacagatctgcgaataacagca 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tgtacatagtaagacagcaattggctgaagtggggatcaacaggtctgcgaataacagca 320
Query: 121 caggaggcacagatgggcgtggctccatgacacaccccggatgtggccccatgacgcact 180
|||||||||||||||||||||||| ||||||||||||
Sbjct: 321 caggaggcacagatgggcgtggct------------------------ccatgacgcact 356
Query: 181 ccaagtctctccttaccttcacatcctccaccttcatgcgtgtgccctccttgcccacaa 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 ctaagtctctccttaccttcacatcctccaccttcatgcgtgtgccctccttgcccacaa 416
Query: 241 aaatgtcatcaatatccaccaggatgtatcggtccaaaggcagtgagaggcgcttccccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 aaatgtcatcaatatccaccaggatgtatcggtccaaaggcagtgagaggcgcttccccg 476
Query: 301 tgaggaaggccacagcatccacgaagacaagcttatgcagccaaaagttgaggttgttgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgaggaaggccacagcatccacgaagacaagcttatgcagccaaaagttgaggttgttgc 536
Query: 361 caaagagcacacgctggatgccatcgtggaggcccaggtcctggaccacagtagcgtgca 420
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 537 caaagagcacacgctggatgccatcgtggagacccaggtcctggaccacagtagcgtgca 596
Query: 421 gcgcagcatgcaggccagcatcagcacccaggtgtgggatggactcgga 469
||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 597 gcgcagcatgcaggccagcatcagcacccaggtgtgggatggattcgga 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 869
Length adjustment: 10
Effective length of query: 459
Effective length of database: 859
Effective search space: 394281
Effective search space used: 394281
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
