NNAATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCATTTATTTCCAACATTTCAACATCAGCCTTGAAATCATTTA
CACATGATCAACAAAATAAGACTCAGGTTAATTTATATATCCTAATGCAT
ATACATGTGTGTGTGACAAATATCATCATAAATAAAGAAGCTGTTAACTT
AAGGTGGGCATGGAAGAGGTTCAATCAAGGATAACTAGAAGGGTCTAGGA
AATGAAAGGAGATAGAAGTAATGTAATTCTTTTTTTTTTCACTCTTTTTT
TATTAGATGTTTTCTTCATTTACATTTCAAATGCTATCCCCTTTCATAGT
TTCCCCTCTGAAAATCCCCTAAATACCCCCCCCCCCCGCCCTGCTCCCCA
ACCCACCCATTCCCCTTTCCTGGCCCTGGCATTCCCCTGTACTGGGGCAT
ACAATCTTCAAAAGACCAAGGGCCTCTCCTCCCATTGATGGCCAACTAGG
CCATCTTCTGCTACATGTGCAATTAGAGACACAAGCTCTGGTGGATATTG
GTTAGCTCATATTGTTCTTCCTCCTATAGGTTAATTCTTTTTTAATAAAA
TAATTTAATTCTTTGAAAAGTAGATTCCGCGTATTCCCGATTTGCTCGGA
TTCCTTAGTTACCGTTTTTAAAGGCCCCTCTATAACGTTATACTCTTTTT
TTATCTACTATACACCCTCTTTGTTTTTCCCCTCCCCCCAATCCCACAAA
AATAATTTCGTAATCATTG

CTCCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTATGCTCTGGGCAAGCAGAT
GCAGGAGGGCTGTCAGATGTTTTCCACTTGGCCCCGGGTGAGCAGGGTGA
GCATCTAAGACATTGACCTCACTCAATGGGGCGTGGACAAGGGGCAGCCC
CTGACCAGGGCCCTGGGGCAACACCCTGTAGCCCTGGGGTTATGAGAGGG
AGGGCTGAGGGAGAGAGGTTCCCACACAGGTGAGAGTATGCGCAGCAGGC
CTTGATGAATGGAGACAGTTTATGGTTTTAGAGCTTTATTGTAAAAAGGC
AGGGATAAAGGAGAGAAGGTGAAAAGAGAGAGAGAGACTGGCCATGGTCT
ATACTAAGGAAGGCGCTACAGAGAGACAGAAAGAGGATAGGCTACTACAT
TCCCACTCTATCTATCTCCAGTCATTAATATTCGCTTACCTTCCTTTCAC
TCTCCCTCCTTTTCTCTTTCTTCCTCCCTCCATCCCTTCCTTTCTCCTCC
TCTCCTTTTCCTTTCCCCGCCCTTTCCCCCCTCTTATTTTTCTTCTCCTC
TTTTTTTCCCTTCTCCCCTTTCCCTCTCCTTCTCTTTTCCCTTTCCCCTC
CTCCTTTCCCTCCTTTTTCTCCCCTTCCTCCTACCTTTTTTTCCCCCCTT
TTTCCCCCCATCTTCCTCATACCTTTTTTCTCCCTTCTTCCCCTTTCCTT
TCCTCTTTCCTCTACTCCTCCTTTTATCTCTTACCTTTCTTTTCCCTTTC
CTCCCCTTTCTTCTCTTTCTTN

Query= MSMg01no394_k09.b1 MSMg01no394_k09.b1 CHROMAT_FILE:
MSMg01no394_k09.b1 PHD_FILE: MSMg01no394_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:40:06 2005
         (447 letters)



>mm_chr18_19689049_19689896
          Length = 848

 Score =  630 bits (326), Expect = 0.0
 Identities = 436/530 (82%), Gaps = 91/530 (17%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttattt---ccaacatttcaacatcagccttgaaatcatttacacatgatca 61
           ||||||||||||     |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcatttat--acaccaacatttcaacatcagccttgaaatcatttacacataatca 262

                                                                       
Query: 62  acaaaataagactcaggttaatttatatatcctaatgcatatacatgtgtgtgtgacaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acaaaataagactcaggttaatttatatatcctaatgcatatacatgtgtgtgtgacaaa 322

                                                                       
Query: 122 tatcatcataaataaagaagctgttaacttaaggtgggcatggaagaggttcaatcaagg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatcatcataaataaagaagctgttaacttaaggtgggcatggaagaggttcaatcaagg 382

                                                                       
Query: 182 ataactagaagggtctagg-----aaa--------------------------------- 203
           | |||||||||||||||||     |||                                 
Sbjct: 383 aaaactagaagggtctagggaatgaaaggagatagaagtaatgtaattcaacttaaggtg 442

                                                                       
Query: 204 ----------------------------------------------tgaaaggagataga 217
                                                         ||||||||||||||
Sbjct: 443 ggcatggaagaggttcaatcaaggaaaactagaagggtctagggaatgaaaggagataga 502

                                                                       
Query: 218 agtaatgtaattcttttttttttcactctttttttattagatgttttcttcatttacatt 277
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 503 agtaatgtaattctttttttttttactctttttttattagatgttttcttcatttacatt 562

                                                                       
Query: 278 tcaaatgctatcccctttcatagtttcccctctgaaaatcccctaaataccccccccccc 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 563 tcaaatgctatcccctttcatagtttcccctctgaaaatcccctaaatacccccccccc- 621

                                                                       
Query: 338 cgccctgctccccaacccacccattcccctttcctggccctggcattcccctgtactggg 397
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 -gccctgctccccaacccacccattcccctttcctggccctggcattcccctgtactggg 680

                                                             
Query: 398 gcatacaatcttcaaaagaccaagggcctctcctcccattgatggccaac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcatacaatcttcaaaagaccaagggcctctcctcccattgatggccaac 730


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 848
Length adjustment: 10
Effective length of query: 437
Effective length of database: 838
Effective search space:   366206
Effective search space used:   366206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)