BAC Information

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BAC

Clone NameMSMg01-395A02
Chromosome18 (Build37)
Map Location 12,415,336 - 12,415,787
singlet/doubletsinglet
Overlap geneAnkrd29
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1
Downstream geneLama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-395A02.T7 (MSMg01no395_a02.b1)MSMg01-395A02.TJ (MSMg01no395_a02.g1)
ACCAG495927AG495928
length771757
length of high quality
(start - end)
456 (48 - 503)443 (79 - 521)
definitionCHROMAT_FILE: MSMg01no395_a02.b1 PHD_FILE: MSMg01no395_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:41 2005CHROMAT_FILE: MSMg01no395_a02.g1 PHD_FILE: MSMg01no395_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:06:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCTCCTCTCTCTTCTGACACGTGTGTTTTTCTGTTTGGGGGTG
GGGGAAAAGGACTTGCTACACAGCCTGGGAGGGCACAGATTTCCTTAGTT
TCCTGAGTGCTGAGACTACAGTACAGGCCTGTGCCACCATGCCAAATTAA
GGTGTAGTTTCATATTAACAGCCACATGGGATCTGGAAGCATATCACGAA
CCACTTTGTACTTTGTTGCATCGAAATCTACAGGTTTTAGCATTAGTTAC
AACATTTGAAATATATTAGCTTACTGAGCCATGCACTTTGTGCAAATATT
GGCATGTTTCTTTTTTGCCACATCAAAAAGTCACATTCACAGAAAGTCAC
ATTCAGTAAAACTACAATTAATTAATCAGAAAAGACTCTCTGGACTGGTA
AGCTATTAAGCCCAACTGTTGCTCTGCCAAATAAACTTGTGGCCAGTGAG
TGGCTCATCCAGTAGAACTTGTTTTCAGGGCTTACCCATTGGAATCAATC
CCCTGACCTATCTCTGGGTCCCAAAAAGCATTCAGAGATTTGACCCTCTG
ATCTTCACACACACTGTGGCACATGGGTGCCCTGACCTTTTTTTTCACCC
TTATTGCCCTATATACCTCCCCTTTAATACAAATGGCCCATTGTTTTTCA
CAAGCCGGCCTTTTTCCCCCCGGCTACACCCTTTAACTCTCCCTAACAGG
CTTTTTCTCTTAATCTTATTG
NNTTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACCAAGGAGCCGGAGGAGCCT
AGAGATTGTCATACAACAATACCAGTACAGAGTGCTGGGCAAGCACACTC
CAGGTACCTGTTCAACTCAGCTACTTAAGACAGAAAGAAAGTCTTTAATG
TAAGGCAGGCAAAATAGAAAACTATTCACACTTTCTTCCCAAAAATATTA
GTTAATAAAATGATATCAATGTAAAAAAAAATGATTCCTCCCTCTGTTCA
AATGCTGATGTGAGAGGAGAGAAACAAATGTGTGGCTTTTCTTTGTTTCA
CAGCTAAAATGGCAGCGTGCTGGGGTTCCACCATCCTGACCATGCAGTGT
GCTGGGGTTCCACAGCCCTGACCATGCAGTGTGCTGGGGTTCCACAGCCC
TGACCATGCAGTGTGCTGGGGTTCCACAGCCCTGACCATGCAGTGTGCTG
GGGTTCCACAGCCCTGACCATGCAGTGCGCTGGGGTTCCACAGCCCTGAT
CATGCAGCGCGCTGGTGTTCCTCAGTCCCGACCTCGTATTGTGCTGGGGC
TCCTCTCCCTTAAATTTCCCCCAATCCACCCCTTTATTATTTTTGCACCT
ACTCCCAATCTTTTTCTCTATATAGCCCCATATACCCCTACCTCTCCCTC
GTTGTGCTCTAACTCCTACACGTTGTATTACTTTCCCCTCCTTATACTCA
TTCCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no395_a02.b1 MSMg01no395_a02.b1 CHROMAT_FILE:
MSMg01no395_a02.b1 PHD_FILE: MSMg01no395_a02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:06:41 2005
         (456 letters)



>mm_chr18_12415132_12415987
          Length = 856

 Score =  835 bits (432), Expect = 0.0
 Identities = 447/452 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctcctctctcttctgacacgtgtgtttttctgtttgggggtgggggaaaagga 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctcctctcttttctgacacgtgtgtttttctgtttgggggtgggggaaaagga 264

                                                                       
Query: 65  cttgctacacagcctgggagggcacagatttccttagtttcctgagtgctgagactacag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttgctacacagcctgggagggcacagatttccttagtttcctgagtgctgagactacag 324

                                                                       
Query: 125 tacaggcctgtgccaccatgccaaattaaggtgtagtttcatattaacagccacatggga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacaggcctgtgccaccatgccaaattaaggtgtagtttcatattaacagccacatggga 384

                                                                       
Query: 185 tctggaagcatatcacgaaccactttgtactttgttgcatcgaaatctacaggttttagc 244
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 385 tctggaagcatatcacgaaccactttgtactttgttgcatggaaatctacaggttttagc 444

                                                                       
Query: 245 attagttacaacatttgaaatatattagcttactgagccatgcactttgtgcaaatattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attagttacaacatttgaaatatattagcttactgagccatgcactttgtgcaaatattg 504

                                                                       
Query: 305 gcatgtttcttttttgccacatcaaaaagtcacattcacagaaagtcacattcagtaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcatgtttcttttttgccacatcaaaaagtcacattcacagaaagtcacattcagtaaaa 564

                                                                       
Query: 365 ctacaattaattaatcagaaaagactctctggactggtaagctattaagcccaactgttg 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctacaattaataaatcagaaaagactctctggactggtaagctattaagcccaactgttg 624

                                           
Query: 425 ctctgccaaataaacttgtggccagtgagtgg 456
           ||||||||||||||| || |||||||||||||
Sbjct: 625 ctctgccaaataaacctggggccagtgagtgg 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)