Query= MSMg01no396_d07.b1 MSMg01no396_d07.b1 CHROMAT_FILE:
MSMg01no396_d07.b1 PHD_FILE: MSMg01no396_d07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:17 2005
(279 letters)
>mm_chr18_22004421_22005099
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 271/275 (98%), Gaps = 3/275 (1%)
Strand = Plus / Plus
Query: 5 ggaattcctataaatgtctcttcacaccttcaataaagcatgctaaggtaaggctgtcag 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcctataaatgtctcttcacaccttcaataaagcatgctaaggtaaggctgtcag 264
Query: 65 ggggtcaaaggcacgccaatgaaaccatccatgaaacattcaagaaacttttcatgagtt 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggggtcaaaggtacgccaatgaaaccatccatgaaacattcaagaaacttttcatgagtt 324
Query: 125 tcagagatctttcttgtgtatagttcactaaatttttctttgagaaagtgattttaaatg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagagatctttcttgtgtatagttcactaaatttttctttgagaaagtgattttaaatg 384
Query: 185 cctgatgttgtgtgtgagtctttattctcaataacctcataggctttgttacactccccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctgatgttgtgtgtgagtctttattctcaataacctcataggctttgttacactccccc 444
Query: 245 cccccctacacacacacacacacacacacacacac 279
||| |||||||||||||||||||||||||||||
Sbjct: 445 ccc---tacacacacacacacacacacacacacac 476
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no396_d07.g1 MSMg01no396_d07.g1 CHROMAT_FILE:
MSMg01no396_d07.g1 PHD_FILE: MSMg01no396_d07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:17 2005
(417 letters)
>mm_chr18_22173141_22173956
Length = 816
Score = 783 bits (405), Expect = 0.0
Identities = 414/417 (99%), Gaps = 1/417 (0%)
Strand = Plus / Minus
Query: 1 tttggaataccccattattaatgctcagcaagaacttgaatataaaaaattgattcctaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tttggaataccccattattaatgctcagcaagaacttgaatataaaaaattgattcctaa 557
Query: 61 ctgccttagatatatctatcctgatagtttgccacatgtgacccaaagcatagtgttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 ctgccttagatatatctatcctgatagtttgccacatgtgacccaaagcatagtgttcat 497
Query: 121 atgtgtgatgagaaaattcagggttcactgatgaccaaatcttctcattagggacatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 496 atgtgtgatgagaaaattcagggttcactgatgaccaaatcttctcattggggacatttt 437
Query: 181 ttatgtggggtccactttaaggttttagtggtaaacagtgtggtagcacactctgcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttatgtggggtccactttaaggttttagtggtaaacagtgtggtagcacactctgcttcc 377
Query: 241 tcccagcatgctatgatgtcattcctttttagaaactgagtaagttcacaaatacctatg 300
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcccagcaagc-atgatgtcattcctttttagaaactgagtaagttcacaaatacctatg 318
Query: 301 taaggcaatccaagaagagatatgttatatgaaaggtatacttggtgttactgatccaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 taaggcaatccaagaagagatatgttatatgaaaggtatacttggtgttactgatccaga 258
Query: 361 cattctccttgggcagaagaattgatcacaattatagatcatctttagatctataat 417
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 cattctccttgggcagaagaattgatcacaattatagatcatctttagatctataat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 816
Length adjustment: 9
Effective length of query: 408
Effective length of database: 807
Effective search space: 329256
Effective search space used: 329256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
