BAC Information

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BAC

Clone NameMSMg01-396D15
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396D15.T7 (MSMg01no396_d15.b1)MSMg01-396D15.TJ (MSMg01no396_d15.g1)
ACCAG496855AG496856
length743767
length of high quality
(start - end)
482 (38 - 519)211 (67 - 277)
definitionCHROMAT_FILE: MSMg01no396_d15.b1 PHD_FILE: MSMg01no396_d15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:18 2005CHROMAT_FILE: MSMg01no396_d15.g1 PHD_FILE: MSMg01no396_d15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:18 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GAACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCAACTGAC
TGAACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTAATGGAG
TTGATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTACACT
TTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGAATTTGTAAAGCCAAT
CTGGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTTTTTTTTT
TTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGCACATT
GGATTTTATAACAGACTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTA
ATACTTCTCCTGTGATTGCCGTAACTTGCAATCTAGTGGGCTTATGTTTG
ATTCCTGTAATCTTTTTTTCTAATTCTTTTTCCTTTTTATATTTTATTTT
ATTTTATTTTATTTTATTTTATTTTATTTCATCTTATTTTATCCCACCNN
CACTTTCTCCCCCCCCTTTCCTCCTTTCCCCCTCCTTTCCTACTCCTTTC
TTCCCCCTACATCCTTTCCCCTTTTCTCTTTTCCTTCTTTACCTATCTAC
ACTTCCTACCCCAAATTTTTTCAAATTATATTTCCCTCATCTCATCCTAC
TCTCTTTTTTTCCCTCCCTATCTTACACCTCTCCCTTTTTTTC
TGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGGGAAATCATCACTCAGGGACTTCAGGCAGA
AAACTAGCCAGTCAGCCTCTGGATAGACAAGGCTCAACAGTTCAGAGAAC
CAGGCCATCGCAAATAGTTCACAGACCTGCAAGGAAGACATGCAGATCCC
TGCCCCCCACCCTACCCCTCCCCCAGCCCCACCCAAACATAGGGAGAAAA
GGCAGTGTGGGNGGAGGGGGAGGTGNTGNNNNNNNNTTTNTNNNNTTTNN
NNTTTTNNNNTTTTTTTTTTTTTNNNNNNNNNNNTNNNTNNNNNNNNNTN
NNTTTTTTTTTTTNNTTTTTTTNTTTTTTTNTTTTTTTTTNTTTTTTTTT
TTTTTTTTTTNNNNNNTNTTTTTTTTTTTTTNTNTTTTTTTNTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTNTTTTTNTNTTTTTTTTNTTTTTTTTTTTTNTTTTTTTTTT
TTTTTTTTTTTNNTTTTNTTTNNTTTTNTTTTTTTTTTTTTTTTTNNTTT
TTTTTTNTTTTTTTTTTTTTTTTTNTTTTTTTTTNTTTTTTTTNNTNTTT
TTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTTNTTTTTTTTTTN
NTNTTTTNTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTNNNTTTTTTTT
TTTTTTTNTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_d15.b1 MSMg01no396_d15.b1 CHROMAT_FILE:
MSMg01no396_d15.b1 PHD_FILE: MSMg01no396_d15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:18 2005
         (482 letters)



>mm_chr18_40467472_40468352
          Length = 881

 Score =  377 bits (195), Expect = e-109
 Identities = 237/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space:   411112
Effective search space used:   411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)