BAC Information

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BAC

Clone NameMSMg01-396L13
Chromosome18 (Build37)
Map Location 43,117,690 - 43,118,161
singlet/doubletsinglet
Overlap genePpp2r2b
Upstream geneGm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-396L13.T7 (MSMg01no396_l13.b1)MSMg01-396L13.TJ (MSMg01no396_l13.g1)
ACCAG497229AG497230
length753742
length of high quality
(start - end)		486 (38 - 523)340 (66 - 405)
definitionCHROMAT_FILE: MSMg01no396_l13.b1 PHD_FILE: MSMg01no396_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:55 2005CHROMAT_FILE: MSMg01no396_l13.g1 PHD_FILE: MSMg01no396_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:08:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTCATTGTGGCGACCAACCTTCTAGCACTGTTACAAACTGCCCAAAAGAA
CAGAAGGAGGAAGGTTATCTGCACTCATTTTCAGGGGTCTCAGTCCATGG
TTGGCTTCACTGCTGTGAGGCCCAAGGCAAGGCAGAATCATTGCAGAGGA
ATCATGAGGCTGAGGAAATGTGTTCACATGATGTCATCCACAAAGCAGAG
GAAGGGGAAAGATGTACTCTTCACAGCATGCCCATGATGATGTACTTCCT
CCCTTGAGGCCCTGTTGTCACCTTTAATTTGGACCTATAGCTTCCAGAAC
CTAGAGGGCTTCTCTAAGGTCCCAATTTGTGGTAATTTACTACACTATCC
TGAGAAAACCAACATAAAATGTGTTTTAATTTTTAAAGGAAAGATTAATT
TACAAATCACATAGAGCAAGATTCACTATTCTGCCATGTGGAGCCATGAA
CCATGCTTTAGGTTGTTTTGGATGCAAGATAAATTTCTGGAATTGAATTT
TGGTACAGGTAAAAGGAAAGGAATGGGGCCTACTTCTTAGTTGCTCTTCA
GATCACGATGTACAGAGGGAGCAGAAAATACTTGAAAGCTACTTAAACAT
CCTATTCCCAAACCCCAAAGAATTCTTGAACTTTCTGGAGAACTATCTTA
CTGAAAAACTGTTTTTAAAAACCCCCGGCCTACTTGGTCTTCCTTTTTTT
TTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATGAATGGGTGT
TGGATCTTGTCAAATGCTTTTTGTGCATCCAACGAGATGATCATGTGGTT
TTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGGATTTTCGTA
TATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGGTCAGGATGG
ATGATTGCTTTAATGTGATCTTGGATTCGGTTAGCGAGAATTTTATTGAG
GATTTTTGCATTTTTATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCT
TTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCTTCATAA
AATGAGCCGGCCAGAGTACTTTCTACTTCTATCTTGTGAAAAAGTTTGTG
CAGAACTGTAATTACATTTTCTTTGAATGTCTGATACAACTTTGCATTAT
ACCCGCCTGTTCCTGTTTTTTTTTCGCGTGGTAGACTATTTATACCGTTT
TCTATCTCTTTACCCATTTGCCTTTGCTTCCATTTCCTTTCTATCTCTTT
TCCTCTTTCCTTCCTTTATTCCCCCCTTTTCATTTTCTCTCTTTTTTTTA
TCTCCTTTTCTCTTCAATTCTTTTTCCCTTTCTTCCTTCATTTTCTTTAT
CCTCTTTTTTTTACCATCTTATATTTTTTTTTTCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no396_l13.b1 MSMg01no396_l13.b1 CHROMAT_FILE:
MSMg01no396_l13.b1 PHD_FILE: MSMg01no396_l13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:08:55 2005
         (486 letters)



>mm_chr18_43117690_43118575
          Length = 886

 Score =  905 bits (468), Expect = 0.0
 Identities = 471/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtcattgtggcgaccaaccttctagcactgttacaaactgcccaaaagaac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gaattctctgtcattgtggcgaccaaccttctagcactgttacaaactgcccaaaagaac 413

                                                                       
Query: 65  agaaggaggaaggttatctgcactcattttcaggggtctcagtccatggttggcttcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 agaaggaggaaggttatctgcactcattttcaggggtctcagtccatggttggcttcact 353

                                                                       
Query: 125 gctgtgaggcccaaggcaaggcagaatcattgcagaggaatcatgaggctgaggaaatgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gctgtgaggcccaaggcaaggcagaatcattgcagaggaatcatgaggctgaggaaatgt 293

                                                                       
Query: 185 gttcacatgatgtcatccacaaagcagaggaaggggaaagatgtactcttcacagcatgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 292 gttcacatgatgtcatccacaaagcagaggaaggggaaagatgtactcttcacggcatgc 233

                                                                       
Query: 245 ccatgatgatgtacttcctcccttgaggccctgttgtcacctttaatttggacctatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccatgatgatgtacttcctcccttgaggccctgttgtcacctttaatttggacctatagc 173

                                                                       
Query: 305 ttccagaacctagagggcttctctaaggtcccaatttgtggtaatttactacactatcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 ttccagaacctagagggcttctctaaggtcccaatttgtggtaatttactacactatcct 113

                                                                       
Query: 365 gagaaaaccaacataaaatgtgttttaatttttaaaggaaagattaatttacaaatcaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 gagaaaaccaacataaaatgtgttttaatttttaaaggaaagattaatttacaaatcaca 53

                                                               
Query: 425 tagagcaagattcactattctgccatgtggagccatgaaccatgctttaggt 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tagagcaagattcactattctgccatgtggagccatgaaccatgctttaggt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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