BAC Information

Click to search

BAC

Clone NameMSMg01-397G10
Chromosome18 (Build37)
Map Location 75,132,061 - 75,132,301
singlet/doubletsinglet
Overlap genenone
Upstream geneMapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298, LOC668124, LOC668126, Myo5b, Acaa2, LOC672799, Lipg
Downstream geneRpl17, BC031181, Dym, LOC628356, EG667777, Smad7, Gm672, Zbtb7c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397G10.T7 (MSMg01no397_g10.b1)MSMg01-397G10.TJ (MSMg01no397_g10.g1)
ACCAG497750AG497751
length771781
length of high quality
(start - end)
242 (73 - 314)340 (77 - 416)
definitionCHROMAT_FILE: MSMg01no397_g10.b1 PHD_FILE: MSMg01no397_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:49 2005CHROMAT_FILE: MSMg01no397_g10.g1 PHD_FILE: MSMg01no397_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCCATATTTGTGGTCGCAAACGAANCCTATTTCAATACCAACCGNGGAA
TTCTTGCAGTTACACCTCCTTCAGCATGGCCATTCACATCCTGGGCATGT
TCCCCCTTGGACCACTGATCTCTGAGATGATGCTAACAGGACTCGCTCTC
TCGGGTCTGTGCTCAGGTCTGTTTTTGTGTAAGTCTGTCTTTCTGAGGCT
TCCTGGCCACCAGCTTTAAAGTGAAACCCCCTACCTTGCAATTACCGTGT
TTTTCACTCCCGCTTTACTGTCATACCGCCATCAGTGGTCATGTTCCGAA
TCTCGACTATTTGTCCATGATTTGCTTCCCCCACTAAGACGCAAAGGATT
TTTGTTCATTTTGATCACTGCTATATCCCTACTGCCCAGGTTTATCTATT
AAATATTCTCCCCCCACCCTAAAGGTCCTATATTTTATTTCATAGTCTAG
TAAGCAGTTATCATCGCCCTAATTCTTCTTGTCTACCCTGACTACCCCCG
ACCTCCTTCATGACTTATACCGCCAATTCCCCCATAACATAAATATTTTT
TCCTTTTCTCCTTGAGTTTCTACTTAATTTATATCCCTTTTCCTTTCAAC
CCTCCCTTTTCTCCTTCCCCTCCTTGCTCCTTCTTTCGTTCTATTTCTTT
TTTCCCCCCCCTTTTTATTTCTCCCCCTTTTTTTCCGTACCACTCTTCTC
ATCTCTCCTAATTTTGTTTTTCCTCCCCCTCTTCCTCCCCCCTTCTATCA
ACTTTTCTTTTTCTCTTTCTC
NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCTTCTAAGTACTGGAATTACA
GTGAGCTCTGCATCTAGTAGGCATTTATGTGGATGCTGAGGGGTCTGAAC
TCCAACCCTCAGGCCTGTGGGGCCAGCACCTCACCCACTGAGCCATGTCC
CCAGGCAGCCATGCCTTACCTTTTCCACATAATGGTCCCGTCAGTCTCCT
TCAGTTCCCAACCCTTCTTCCCAACGGCACTCCGTCTCTCAGTGCACTGA
GAGCTGCAAAGCATGAATTCTTTATCCCACAGACAGACAGACAGACAGAC
AGACAGACAGACAGACAGACACATTGCCAAAGGCATGGAGCTACAATGTG
ACACACCACACCGCAGCCACTGAACCCAGCAACAGGTCTGCCTAACACGA
CAGGAAAATGACACCTCAGTCAAGTTTGCAAAATGTACTTTCTCCCCATG
TATAGGAAAATGTGCCTTTTAAAACCACTCTTCTCCTCACAGCCATCCAC
TGGAATTAAGCTAGCCAGGCCATACTCAAGCCTCTGGTGAACTTATGCCT
CCTCATAAATCGCGTCCGCCTTCTAATTTACCCTTCTAACCTGTCTTTTT
TCTCTTTTTGTTTCCCACCCTGATTGTGTACATATTTCCTTCTTTCCACC
TCCCCTCTCTCCCTGTCTCATCCCCCTCATTCTTTACTACATCATCTGCT
TTTTCCATATGCCTTACTCCCTCTCTATTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_g10.b1 MSMg01no397_g10.b1 CHROMAT_FILE:
MSMg01no397_g10.b1 PHD_FILE: MSMg01no397_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:49 2005
         (242 letters)



>mm_chr18_75131861_75132507
          Length = 647

 Score =  369 bits (191), Expect = e-107
 Identities = 227/241 (94%), Gaps = 5/241 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatggccattcacatcctgggcatgttccccc-ttggaccactgatctctgagatgat 59
           ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 agcatggccgttcacatcctgggcatgttcccccattggaccactgatctctgagatgat 260

                                                                       
Query: 60  gctaacaggactcgctctctcgggtctgtgctcaggtctgtttttgtgtaagtctgtctt 119
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctaacgggactcgctctctcgggtctgtgctcaggtctgtttttgtgtaagtctgtctt 320

                                                                       
Query: 120 tctgaggcttcctggccaccagctttaaagtgaaaccccctaccttgcaattaccgtgtt 179
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 321 tctgaggcttcctggccaccaactttaaagtgaaaccccctaccttgcaattaccgtgct 380

                                                                       
Query: 180 tttcactcccgctttactgtcataccgc----catcagtggtcatgttccgaatctcgac 235
           |||||||||| ||||||||||| | |||    ||||||||||||||||||| |||| |||
Sbjct: 381 tttcactcccactttactgtcacaacgcttgccatcagtggtcatgttccgcatcttgac 440

            
Query: 236 t 236
           |
Sbjct: 441 t 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 647
Length adjustment: 9
Effective length of query: 233
Effective length of database: 638
Effective search space:   148654
Effective search space used:   148654
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)