BAC Information

Click to search

BAC

Clone NameMSMg01-397I08
Chromosome18 (Build37)
Map Location 78,303,553 - 78,303,729
singlet/doubletsinglet
Overlap geneSlc14a1
Upstream genePias2, EG639653, St8sia5, Loxhd1, Rnf165, 8030462N17Rik, 4930465K10Rik, Ccdc5, Atp5a1, Pstpip2, 5430411K18Rik, Cd33l3
Downstream geneSlc14a2, EG620155, Setbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-397I08.T7 (MSMg01no397_i08.b1)MSMg01-397I08.TJ (MSMg01no397_i08.g1)
ACCAG497841AG497842
length795835
length of high quality
(start - end)
178 (74 - 251)39 (119 - 157)
definitionCHROMAT_FILE: MSMg01no397_i08.b1 PHD_FILE: MSMg01no397_i08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:59 2005CHROMAT_FILE: MSMg01no397_i08.g1 PHD_FILE: MSMg01no397_i08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:09:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAATATTGCGGCCGCTAAAAGAATCACAAATTTCGTACCTGCGCGGNAA
TCNCACTTTTTTCCATGACAACAGGCGCTTTCACACTTCTCTGTTTAGTA
ACTGTTGCCTTTATTGATCACTATTCACCTCTGCCCTGAAGCTGGTACCA
CATTGTCACAGTGTTTCTTCCAGGCGGTTTTGTTGGGGGAATCTCTCAGG
CGCTGTGTGCCTGAGAATAGCTCCCTTTCTCGCTGATTTATGTCTTAGTG
TTTTCAAAACTAGATTTAAGGATTTTTTTTTCTTTTCTAACATTTTGAAT
ATTGCCTTCCAAGACTTTCAATGCTTTTTTCCACCCCAAGTCACCATGAA
AACTTCTATTAGGAACCTATCTCCTTGTGAAAAGCCCCTTTTATTTTTTT
CTCTGCATATTTACCCCCCCCCCCTCGCTGTATTACTTAATATTTTTTTT
GTGCGCCGTACTATCCCATTTCCCTCCCCTTATTATTACCCATTTTCTCA
TTACTTTCTCTCTTCCCCCTCTTTCACTCTTTCTTTCCTACTTTTATCCC
CTCCAACTCTTTCACTACTTATCCTTTTTATCCATTCCATTCCCCCTCTT
CTTTTTCCCCTTTTTCCTTTTCATCCCCTATTTTTTTCATTCCCCTTTCT
TCCCCTTTTATTCTTATTATCCCCTTTTCCCTCCCCTTTTTTTCCGCCCC
CTCTAATTCATTCTCTATTCTCTTTCTCTTCTATTTACCTTATTTCTTCC
CCATATATCTCCTTCCTCTATCTACTCTTCTTTTATCCCTTTTCG
CCATGCTAGGGGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCAGAATTCTTCTGACAATGGAGATTCTCCACAGATACTTA
AAGTACACTCTGACACAGAATTTATCAGGGCCCAGGAAATAGGGGGGTTG
TGGTATTGCATTATTCATGAGACGGTCCGCTATAGCAGAACCCCTGGTGG
CGGGTTTATTTCTAGACTAGCTTGACCCCTGGTTCCCTTCCCTGTTTTTT
TGCCTGGTCCCCGCCCTCTTTTGACGTATACATTCCTTTTGCACCCCCGC
CCGGCCAATCTTTGCTAGATTTTCCCCCACCCCGCCCGCCCCCCCGCCGG
ACTTTTTTTCCCCCCCCTCTGACTTGTGCGGCTCCTCCCTCCTTTTCTCT
CTTCTCCTCTTCCCCCCCCTCTCTCTCTTTTTTTCTTTTCTCTTCCTTCC
TTCCTTTCCCCTCTTTTCCTCCCTTCTCTTTTTTTTCTTCTCTTCCCCCC
GCCCTTCCTTTTTCCTCGCCCTTTTCCCTCCCCTCTCTCCGTACCCTTTC
TCCCTTTTCTTTCCCCCTCCGTTCCCGCCTTTTTCCCTTTTCGCCCCCTT
CGCGCTTGCCTCCCCTTCCTTTCCCTTCTGCCCATTCCCCTCTCTCTTCC
GCTTTTCTTCTTATTTCTTCCCTTTTCTCACCATATTCTTTCTTTTCTTT
TCTCGTTTCTCCCCCCTTATTTCCCTCCTTTTATCCCTGCATGCCGCCCT
TCGCTTCGTCCTACATCTCATCAGCGTCACTTCTATTCTTCGCCTTCTTC
TTCTTCCTATGTTCCTTGTCGTGTTCTGATTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no397_i08.b1 MSMg01no397_i08.b1 CHROMAT_FILE:
MSMg01no397_i08.b1 PHD_FILE: MSMg01no397_i08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:09:59 2005
         (178 letters)



>mm_chr18_78303353_78303930
          Length = 578

 Score =  281 bits (145), Expect = 2e-80
 Identities = 169/177 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggcgctttcacacttctctgtttagtaactgttgcctttattgatcactattcacctctg 60
           ||||||||||||||||||||||||||||||||| |||||| |||| | ||||||||||||
Sbjct: 377 ggcgctttcacacttctctgtttagtaactgttccctttagtgatgagtattcacctctg 318

                                                                       
Query: 61  ccctgaagctggtaccacattgtcacagtgtttcttccaggcggttttgttgggggaatc 120
           |||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ccctgaagctcgaatcacattgtcacagtgtttcttccaggcggttttgttgggggaatc 258

                                                                    
Query: 121 tctcaggcgctgtgtgcctgagaatagctccctttctcgctgatttatgtcttagtg 177
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tctcaggcgctatgtgcctgagaatagctccctttctcgctgatttatgtcttagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)