Query= MSMg01no397_k20.b1 MSMg01no397_k20.b1 CHROMAT_FILE:
MSMg01no397_k20.b1 PHD_FILE: MSMg01no397_k20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:11 2005
(431 letters)
>mm_chr18_10320363_10321193
Length = 831
Score = 789 bits (408), Expect = 0.0
Identities = 423/428 (98%)
Strand = Plus / Plus
Query: 4 ggaattctcataacctctccttggaaaagctccccccaccccaccccaaccctgtggcag 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctcataaccacaccttggaaaagctccccccaccccaccccaaccctgtggcag 263
Query: 64 tggtgattgtttccaattaattttggaagggaaactttcagatcctagaaatctgatcca 123
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tggtgatcatttccaattaattttggaagggaaactttcagatcctagaaatctgatcca 323
Query: 124 acatccaggacagaggtaaggaaattccagtcctcctccactggaagaatgatggctgat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acatccaggacagaggtaaggaaattccagtcctcctccactggaagaatgatggctgat 383
Query: 184 gggagtaaggcccagtggacagcttgagaggcggccatgcttcaggtttggaatttgggt 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 gggagtaaggcccagtggacagcttgggaggcggccatgcttcaggtttggaatttgggt 443
Query: 244 taatgcaccttttccttccaacaaggcccaaatatccttccatgtgatgctgcagctgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 taatgcaccttttccttccaacaaggcccaaatatccttccatgtgatgctgcagctgag 503
Query: 304 gcgctgctgcagctgaggcgctgaggacctggttatactttcttttttttttttttaaag 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gcgctgctgcagctgaggcgctgaggacctggttatactttcttttttttttttttaaag 563
Query: 364 atttatttattgattatatgtaagtacactgtagctgtcttcatacactccagaagaggg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atttatttattgattatatgtaagtacactgtagctgtcttcatacactccagaagaggg 623
Query: 424 agtcagat 431
||||||||
Sbjct: 624 agtcagat 631
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space: 346884
Effective search space used: 346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no397_k20.g1 MSMg01no397_k20.g1 CHROMAT_FILE:
MSMg01no397_k20.g1 PHD_FILE: MSMg01no397_k20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:11 2005
(248 letters)
>mm_chr18_10508606_10509250
Length = 645
Score = 426 bits (220), Expect = e-124
Identities = 240/248 (96%), Gaps = 3/248 (1%)
Strand = Plus / Minus
Query: 1 agacaatcacagaagacaaaactgaggccagggagacttgaaagggaagtttgcaatggt 60
|||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 445 agactatcacagaagacaaaactgaggccagggagacttgaaagggaagattgcaa---t 389
Query: 61 gtgtggctaatatgagctgtggcttgagaccactgtaagacgtaagtgcttacttgctag 120
||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 388 gtgcggctaatatgagctgtggcttgagatcattgtaagacgtaagtgcttacttgctag 329
Query: 121 ctggagtatggtgggtttaaatgaactgtgggatgctaggtgctatgtgttttgtctaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctggagtatggtgggtttaaatgaactgtgggatgctaggtgctatgtgttttgtctaga 269
Query: 181 gctctagctctgttctcctgtactctagtgatggtctctttcaaggaggattttcaaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gctctagctctgttctcctgtactctagtgatggtctctttcaaggaggattttcaaaga 209
Query: 241 tacaagac 248
||||||||
Sbjct: 208 tacaagac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 645
Length adjustment: 9
Effective length of query: 239
Effective length of database: 636
Effective search space: 152004
Effective search space used: 152004
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
