MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-398B13
Chromosome	18 (Build37)
Map Location	66,864,554 - 66,865,069
singlet/doublet	singlet
Overlap gene	none
Upstream gene	5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1, Pmaip1, LOC100042852
Downstream gene	Mc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1, Cep76, Tnfsf5ip1, Ptpn2
Link	Open Mouse BAC browser

Click to get alignment info.

name	5330437I02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:319888 MGI:2442915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sec11c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66286 MGI:1913536
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225642 MGI:95833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rax (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19434 MGI:109632
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Cplx4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225644 MGI:2685803
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Lman1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70361 MGI:1917611
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ccbe1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320924 MGI:2445053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pmaip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58801 MGI:1930146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042852 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042852
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Mc4r (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17202 MGI:99457
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gnal (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14680 MGI:95774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Chmp1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67064 MGI:1914314
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mppe1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225651 MGI:2661311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Impa2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:114663 MGI:2149728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	B430212C06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:338360 MGI:2442134
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs

name	Cidea (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12683 MGI:1270845
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tubb6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67951 MGI:1915201
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Afg3l2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69597 MGI:1916847
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slmo1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225655 MGI:2442865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Spire1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68166 MGI:1915416
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cep76 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:225659 MGI:1923401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnfsf5ip1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:107047 MGI:1922901
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19255 MGI:97806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5330437I02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130333 GeneID:319888 MGI:2442915
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 5330437I02 gene transcript_id : NM_177028.3

name	Sec11c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802396 GeneID:66286 MGI:1913536
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SEC11 homolog C (S. cerevisiae) transcript_id : NM_025468.2

name	Grp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31341342 GeneID:225642 MGI:95833
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gastrin releasing peptide transcript_id : NM_175012.2

name	Rax (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:89274178 GeneID:19434 MGI:109632
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : retina and anterior neural fold homeobox transcript_id : NM_013833.2

name	Cplx4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703969 GeneID:225644 MGI:2685803
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : complexin 4 transcript_id : NM_145493.1

name	Lman1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:37537549 GeneID:70361 MGI:1917611
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : lectin, mannose-binding, 1 transcript_id : NM_027400.2

name	Ccbe1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124378017 GeneID:320924 MGI:2445053
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : collagen and calcium binding EGF domains 1 transcript_id : NM_178793.4

name	Pmaip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130467 GeneID:58801 MGI:1930146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phorbol-12-myristate-13-acetate-induced protein 1 transcript_id : NM_021451.2

name	Mc4r (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367913 GeneID:17202 MGI:99457
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanocortin 4 receptor transcript_id : NM_016977.3

name	Gnal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517710 GeneID:14680 MGI:95774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, alpha stimulating, olfactory type transcript_id : NM_177137.4

name	Gnal (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124517707 GeneID:14680 MGI:95774
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanine nucleotide binding protein, alpha stimulating, olfactory type transcript_id : NM_010307.2

name	Chmp1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13195617 GeneID:67064 MGI:1914314
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : chromatin modifying protein 1B transcript_id : NM_024190.1

name	Mppe1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142365099 GeneID:225651 MGI:2661311
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : metallophosphoesterase 1 transcript_id : NM_172630.2

name	Impa2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131116 GeneID:114663 MGI:2149728
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : inositol (myo)-1(or 4)-monophosphatase 2 transcript_id : NM_053261.2

name	B430212C06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149269815 GeneID:338360 MGI:2442134
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 ESTs product : RIKEN cDNA B430212C06 gene transcript_id : XM_148862.10

name	Cidea (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680943 GeneID:12683 MGI:1270845
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell death-inducing DNA fragmentation factor, alpha subunit-like effector A transcript_id : NM_007702.1

name	Tubb6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27754055 GeneID:67951 MGI:1915201
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tubulin, beta 6 transcript_id : NM_026473.2

name	Afg3l2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625760 GeneID:69597 MGI:1916847
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : AFG3(ATPase family gene 3)-like 2 (yeast) transcript_id : NM_027130.1

name	Slmo1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87196348 GeneID:225655 MGI:2442865
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : slowmo homolog 1 (Drosophila) transcript_id : NM_144867.2

name	Spire1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686104 GeneID:68166 MGI:1915416
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spire homolog 1 (Drosophila) transcript_id : NM_194355.2

name	Spire1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:116686107 GeneID:68166 MGI:1915416
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : spire homolog 1 (Drosophila) transcript_id : NM_176832.2

name	Cep76 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486732 GeneID:225659 MGI:1923401
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : centrosomal protein 76 transcript_id : NM_001081073.1

name	Tnfsf5ip1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527371 GeneID:107047 MGI:1922901
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : tumor necrosis factor superfamily, member 5-induced protein 1 transcript_id : NM_134138.1

name	Ptpn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130582 GeneID:19255 MGI:97806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, non-receptor type 2 transcript_id : NM_008977.2

name	5330437I02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892903 CCDS:CCDS29308.1 GeneID:319888 MGI:2442915
definition	GO_function : GO:0016747 - transferase activity, transferring groups other than amino-acyl groups [Evidence IEA] codon_start : 1 product : hypothetical protein LOC319888 protein_id : NP_796002.1

name	Sec11c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313554 CCDS:CCDS29309.1 GeneID:66286 MGI:1913536
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005792 - microsome [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008236 - serine-type peptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA] codon_start : 1 product : Sec11-like 3 protein_id : NP_079744.1

name	Grp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30424687 CCDS:CCDS29310.1 GeneID:225642 MGI:95833
definition	GO_component : GO:0005615 - extracellular space [Evidence ISS] GO_function : GO:0005184 - neuropeptide hormone activity [Evidence ISS] GO_process : GO:0007218 - neuropeptide signaling pathway [Evidence ISS] [Evidence IEA] codon_start : 1 product : gastrin releasing peptide protein_id : NP_778177.1

name	Rax (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:89274179 CCDS:CCDS29311.1 GeneID:19434 MGI:109632
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0007420 - brain development [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0043010 - eye development (sensu Vertebrata) [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : eyeless 1; Rx/rax homeoprotein product : retina and anterior neural fold homeobox protein_id : NP_038861.2

name	Cplx4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703970 CCDS:CCDS29312.1 GeneID:225644 MGI:2685803
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0000149 - SNARE binding [Evidence IDA]; GO:0019905 - syntaxin binding [Evidence IEA] GO_process : GO:0006887 - exocytosis [Evidence IEA]; GO:0006836 - neurotransmitter transport [Evidence IEA]; GO:0046928 - regulation of neurotransmitter secretion [Evidence IDA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : complexin IV product : complexin 4 protein_id : NP_663468.1

name	Lman1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312570 CCDS:CCDS29313.1 GeneID:70361 MGI:1917611
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0005793 - ER-Golgi intermediate compartment [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0030017 - sarcomere [Evidence IDA] GO_function : GO:0005529 - sugar binding [Evidence IEA] GO_process : GO:0006888 - ER to Golgi vesicle-mediated transport [Evidence TAS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : lectin, mannose-binding, 1 protein_id : NP_081676.1

name	Ccbe1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30520281 CCDS:CCDS29314.1 GeneID:320924 MGI:2445053
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006817 - phosphate transport [Evidence IEA] codon_start : 1 product : collagen and calcium binding EGF domains 1 protein_id : NP_848908.1

name	Pmaip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:10946832 CCDS:CCDS29315.1 GeneID:58801 MGI:1930146
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006917 - induction of apoptosis [Evidence IDA]; GO:0008629 - induction of apoptosis by intracellular signals [Evidence IMP]; GO:0048147 - negative regulation of fibroblast proliferation [Evidence IMP]; GO:0001844 - protein insertion into mitochondrial membrane during induction of apoptosis [Evidence IMP]; GO:0001836 - release of cytochrome c from mitochondria [Evidence IMP]; GO:0006974 - response to DNA damage stimulus [Evidence IMP]; GO:0009411 - response to UV [Evidence IMP]; GO:0010165 - response to X-ray [Evidence IMP] codon_start : 1 product : phorbol-12-myristate-13-acetate-induced protein 1 protein_id : NP_067426.1

name	Mc4r (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85861190 CCDS:CCDS29316.1 GeneID:17202 MGI:99457
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0004977 - melanocortin receptor activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007631 - feeding behavior [Evidence IMP]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA]; GO:0019222 - regulation of metabolism [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : melanocortin 4 receptor protein_id : NP_058673.2

name	Gnal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84000001 CCDS:CCDS29317.1 GeneID:14680 MGI:95774
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007190 - adenylate cyclase activation [Evidence IDA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IDA]; GO:0007608 - sensory perception of smell [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; guanine nucleotide binding protein, alpha 10; G alpha 10; G_olf product : guanine nucleotide binding protein, alpha stimulating, olfactory type isoform 2 protein_id : NP_796111.2

name	Gnal (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47271350 CCDS:CCDS29318.1 GeneID:14680 MGI:95774
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence ISS] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence ISS]; GO:0019001 - guanyl nucleotide binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007190 - adenylate cyclase activation [Evidence IDA]; GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence ISS]; GO:0007189 - G-protein signaling, adenylate cyclase activating pathway [Evidence IDA]; GO:0007608 - sensory perception of smell [Evidence IMP]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; guanine nucleotide binding protein, alpha 10; G alpha 10; G_olf product : guanine nucleotide binding protein, alpha stimulating, olfactory type isoform 1 protein_id : NP_034437.1

name	Chmp1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13195618 GeneID:67064 MGI:1914314
definition	GO_process : GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 product : chromatin modifying protein 1B protein_id : NP_077152.1

name	Mppe1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27369902 CCDS:CCDS29319.1 GeneID:225651 MGI:2661311
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] codon_start : 1 note : metallo phosphoesterase product : metallophosphoesterase 1 protein_id : NP_766218.1

name	Impa2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:16716595 CCDS:CCDS29320.1 GeneID:114663 MGI:2149728
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0008934 - inositol-1(or 4)-monophosphatase activity [Evidence IEA] [Evidence ISS]; GO:0031403 - lithium ion binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006020 - myo-inositol metabolism [Evidence TAS] codon_start : 1 product : inositol (myo)-1(or 4)-monophosphatase 2 protein_id : NP_444491.1

name	B430212C06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149269816 GeneID:338360 MGI:2442134
definition	codon_start : 1 product : hypothetical protein LOC338360 protein_id : XP_148862.5

name	Cidea (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680944 GeneID:12683 MGI:1270845
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005740 - mitochondrial envelope [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0006629 - lipid metabolism [Evidence IMP] codon_start : 1 exception : mismatches in translation product : cell death-inducing DNA fragmentation factor, alpha subunit-like effector A protein_id : NP_031728.1

name	Tubb6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27754056 CCDS:CCDS29321.1 GeneID:67951 MGI:1915201
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0051258 - protein polymerization [Evidence IEA] codon_start : 1 product : tubulin, beta 6 protein_id : NP_080749.2

name	Afg3l2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625761 GeneID:69597 MGI:1916847
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005743 - mitochondrial inner membrane [Evidence IDA]; GO:0005739 - mitochondrion [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0030163 - protein catabolism [Evidence IEA] codon_start : 1 product : AFG3(ATPase family gene 3)-like 2 protein_id : NP_081406.1

name	Slmo1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21450093 GeneID:225655 MGI:2442865
definition	codon_start : 1 product : slowmo homolog 1 protein_id : NP_659116.1

name	Spire1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37595748 CCDS:CCDS29323.1 GeneID:68166 MGI:1915416
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0048193 - Golgi vesicle transport [Evidence IDA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : Spir-1 protein isoform 1 protein_id : NP_919336.1

name	Spire1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37595746 GeneID:68166 MGI:1915416
definition	GO_component : GO:0005794 - Golgi apparatus [Evidence IDA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0048193 - Golgi vesicle transport [Evidence IDA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2 product : Spir-1 protein isoform 2 protein_id : NP_789802.1

name	Cep76 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486733 GeneID:225659 MGI:1923401
definition	codon_start : 1 product : centrosomal protein 76 protein_id : NP_001074542.1

name	Tnfsf5ip1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527372 CCDS:CCDS29324.1 GeneID:107047 MGI:1922901
definition	GO_component : GO:0005634 - nucleus [Evidence IDA] GO_process : GO:0006915 - apoptosis [Evidence IDA]; GO:0007094 - mitotic spindle checkpoint [Evidence IDA]; GO:0042981 - regulation of apoptosis [Evidence IDA]; GO:0000074 - regulation of progression through cell cycle [Evidence IDA] codon_start : 1 note : CD40 ligand-activated specific transcript 3 product : Clast3 protein protein_id : NP_598899.1

name	Ptpn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679553 GeneID:19255 MGI:97806
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004721 - phosphoprotein phosphatase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA] GO_process : GO:0008286 - insulin receptor signaling pathway [Evidence IMP]; GO:0006470 - protein amino acid dephosphorylation [Evidence IMP] codon_start : 1 note : T cell protein-tyrosine phosphatase product : protein tyrosine phosphatase, non-receptor type 2 protein_id : NP_033003.1

name	LOC100042852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042852
definition	number : 3 pseudo : _no_value

name	LOC100042852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042852
definition	number : 2 pseudo : _no_value

name	LOC100042852 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042852
definition	number : 1 pseudo : _no_value

clone name	MSMg01-449P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362B08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307P13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-492G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-260P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511A17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-338A03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-454E10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-058D14
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-446C15
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-166G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-048N12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-440P04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-452K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-198A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-294B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-363I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134O17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-109G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-329B21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-190D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-490C09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-334E03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-485D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-506D17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407N15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-304C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402B08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-171E21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421E14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-490H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540G16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294F07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-442K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-530B19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-327F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-323C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-389M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-054P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405B07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129C21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381N10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-308K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377F08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021N21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-337A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319H14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-054I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-251G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-260A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-094I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264L22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-094I06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-295C18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296E21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-201A05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148F01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-343J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-070O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-282M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343F20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-012G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-066I11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246D02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316M07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163G01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-338E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144L23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-300D18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-111A10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-049I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132L03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116I16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-293N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-099E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-324E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204B19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-149I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-301E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-031J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-046M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163M07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047D07
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-398B13.T7 (MSMg01no398_b13.b1)	MSMg01-398B13.TJ (MSMg01no398_b13.g1)
ACC	AG498281	AG498282
length	770	784
length of high quality (start - end)	549 (46 - 594)	241 (75 - 315)
definition	CHROMAT_FILE: MSMg01no398_b13.b1 PHD_FILE: MSMg01no398_b13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:44 2005	CHROMAT_FILE: MSMg01no398_b13.g1 PHD_FILE: MSMg01no398_b13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:44 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG AATTCTTGGACTTTCCAGTTGTTGACAGCCATTGTTGGACTAGCTGGACC ACAGCCTGTAAGCCACTCTACTGAGTACATATACACATGGATTCATTATA TCTATTAATTTTGTACATTCTATCAGCTCTGTTCCTCTAGAGAACTCTAA TACAGTATGTATAATAAATGGTTTTTGTTTTTTGTTTTTGTCTTCTTCTT GAAAAAAAGAAAAGAAAAGAAATAGAAAATTATTTGTTAGGGGAAATTTA TAGATGGTATTTGAGGGATATAAAGCCTCAATTAGGTAGGAATGAAGTTG ATATTTTCATTTTTGGTGCCTGGTTAATTTGTTTGCAGAGAGGTAAGTCT TGCTACACATCTCAAGGAGGTCTCATTATATAGCCCATGTTCTCCTCAGA TTCATATCAGCCTTCCTGCCTCGGCTTCTTAAGTGATAGGAGTACAGAAA TATATCACAGTGTCCAGCTTGATTTTTTTTTTTAAAATCCTATTCATTGT TCAGCACAGGAAAATACTGTTATCCTTATGATTATAGATGAAAAAGGTCC AGAGGGATATTTTTTATTTCTTTCTCCTTTTCTTTAGACATCTGTCACTT ATCACTCGTGCGGGTCTGGCCCCCCGCCTTTTTCTTCCCCTTTTTTTTTT CCTTCTTGAGCCCTCTTCGTTTTCTTCCCCTTCCCCCCCTTTCATCCCTT ATGTTCTTTCTCTTTCTCTN	ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXCATCCAAGACTAGGGTTGGCTCAAAGACTAC CTAGTAGGCATTGGTGAAGGCCAGGAAGCAAAGTTCGATTTTGCTTAGGT ATTTGGCAAGTCATTGCTTGGAGGCACCTATAACAAAACAATACTGAAAG GAAGCACACAGTTCCATTTGCAAGGACAAAATTGGAGCATACGTGCTATG GAATGCCACAGTTCCAGGAGACTAAGTTTTCGTGAAACTCTTCGTCTCAG GACTGCATCCAGGCTTGTGGTCTGTCATGCATGTCACTACTGGAGTGGAT GTAGCCTCTGAGCAAGGCACTGATCCATAGGGAGAGCAATATGTCATTAG AAGTCATGCTATTGCTAGGTCCTTTTAGGAGAGCAATAGTATTGGGTTTC CCCTAGGCCCATGACCTGTCTGGTCTCAGGTTGCATGCAAGGTGTCTTCG TTTTCACACTGTCCCTCTCAATCTGATCATCCCTCCTACCGCCCACCTTT ACTACTTCCTATCTCCCTTCTTCTCGCCTATTCTATCTCCTTGCTACCAT TTTTTCCCTCCTTTATCCATGCTTGCTTTCGCTATCTTCCCCCATCCTTC TTTTTTTTTCTTCTCCCCCCCCCTTATCTTCTCACTTCCTCCCCCTTTCC TCTTCCCTCTTTTTTTTTTTTTCTCTCCCTTCTTCTCCTTCTTCTCCCTC CCCCTCTTCCCCCCCCTCCTTTTTCCTTCCTTTN
quality values	Open. Hide. 8 10 8 8 8 10 19 30 32 35 34 34 30 24 29 25 28 19 17 17 25 30 30 47 59 30 30 30 24 17 11 10 8 8 8 8 9 11 20 20 18 18 24 27 29 30 41 50 50 31 31 31 33 33 33 47 37 25 21 12 13 11 13 9 9 9 15 12 33 37 46 46 48 47 53 50 50 36 42 36 37 40 50 57 57 57 53 53 53 53 68 68 68 68 68 68 68 47 47 42 47 47 50 50 50 68 68 68 68 68 59 54 57 57 68 68 68 68 57 57 57 57 57 57 57 50 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 62 62 62 62 52 59 59 59 59 59 44 39 21 21 21 11 11 11 24 28 35 43 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 59 57 57 57 57 57 57 59 57 57 54 54 57 57 68 59 59 59 54 54 52 59 52 57 52 52 59 52 59 59 59 59 59 57 57 59 57 68 68 68 68 68 68 59 57 57 57 57 68 68 68 68 68 68 59 59 57 57 54 57 57 57 59 57 57 57 44 40 40 44 46 57 57 59 59 57 57 57 59 59 68 68 68 68 48 48 43 43 47 47 57 54 59 59 59 59 59 59 59 59 57 59 59 57 57 48 48 48 57 59 59 43 43 35 35 39 43 57 57 57 48 39 43 39 37 32 30 41 41 59 47 43 41 37 37 43 41 34 34 32 30 30 32 32 32 30 30 32 37 28 32 32 43 39 57 37 36 28 25 25 31 33 39 37 37 37 39 25 20 12 12 12 17 22 20 22 24 30 33 50 50 53 50 37 30 21 14 14 23 26 37 43 43 43 39 34 28 25 25 28 34 39 39 32 14 12 8 8 8 15 13 28 28 28 22 28 19 14 13 18 19 12 12 13 13 20 31 25 25 33 31 39 30 23 16 16 11 19 21 28 28 28 28 25 18 19 16 12 9 9 8 8 8 8 8 9 12 9 10 8 10 8 8 10 14 11 10 10 10 13 14 10 10 10 7 7 6 10 6 10 10 11 17 18 22 15 15 8 7 7 8 8 11 11 8 8 7 6 6 6 8 8 8 6 6 6 6 9 9 9 9 9 9 10 10 10 11 11 15 8 8 10 10 9 10 10 15 13 8 8 8 8 10 12 12 11 8 8 8 8 10 10 10 10 12 10 15 11 11 11 12 10 10 9 10 10 19 18 18 15 9 9 9 9 10 20 26 14 12 12 10 10 10 13 12 11 12 12 20 11 9 9 9 8 8 8 9 15 15 14 13 12 12 11 10 9 19 19 14 12 8 8 8 8 6 6 6 7 6 10 8 12 8 8 8 16 19 23 23 18 18 3 0	Open. Hide. 13 17 17 11 11 10 17 19 9 9 9 16 23 25 29 32 28 28 34 34 28 32 32 28 28 37 37 17 23 9 9 9 7 6 6 6 6 8 8 13 11 15 15 18 25 30 44 37 37 37 39 37 47 47 34 25 15 9 9 9 12 8 8 8 7 7 7 6 6 6 6 8 11 8 11 14 27 34 41 42 50 50 50 50 50 50 50 47 30 29 23 22 18 26 35 39 39 41 47 50 59 59 48 59 59 59 57 57 53 53 44 44 27 28 14 19 21 20 23 25 28 32 29 32 42 42 48 48 54 54 48 57 50 54 54 50 50 53 68 50 51 68 68 68 57 57 57 57 47 47 47 50 50 51 57 68 57 57 57 57 37 37 44 57 57 57 68 59 59 57 54 54 57 57 57 59 54 59 59 59 59 59 59 59 59 57 57 54 54 54 57 59 57 68 57 57 57 57 57 57 57 57 68 59 59 59 59 54 47 47 47 59 43 46 46 54 57 57 59 57 54 48 57 48 48 48 48 48 47 47 47 50 50 50 57 57 57 57 53 53 50 50 47 59 26 28 15 21 19 11 11 12 22 26 37 37 41 41 43 43 48 48 44 43 43 48 48 48 48 48 48 57 57 48 59 59 59 59 59 59 59 48 59 59 57 57 57 57 57 57 59 59 59 48 48 47 47 47 47 47 47 59 59 59 59 59 59 59 59 30 25 12 8 6 6 6 6 6 6 9 9 9 9 19 27 47 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 44 32 32 37 37 37 27 30 18 12 18 21 21 20 22 11 12 19 21 15 20 24 20 20 20 32 32 48 43 43 43 43 43 42 39 43 39 36 43 47 43 43 43 43 43 36 40 26 30 28 31 27 30 17 18 18 30 18 20 20 22 22 36 40 37 30 31 25 33 25 23 22 29 25 25 28 30 30 37 30 30 18 18 14 14 14 21 26 28 32 28 24 19 17 17 17 21 17 18 8 8 8 10 17 18 32 28 19 19 11 12 12 19 24 31 33 37 37 30 30 28 37 37 30 23 23 10 10 10 13 21 26 28 23 23 23 23 30 25 21 18 16 11 11 11 20 16 11 11 15 15 12 10 6 6 8 8 9 9 8 8 8 8 6 6 8 8 12 8 10 15 12 8 8 8 8 8 10 10 10 8 8 8 8 8 10 9 8 12 10 8 6 6 7 10 8 8 8 6 6 6 7 13 10 8 8 8 8 8 8 8 15 10 10 10 8 8 8 8 8 8 6 7 6 6 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 9 11 15 15 12 12 11 10 10 12 12 12 11 11 9 8 8 8 8 8 17 14 11 10 9 10 8 8 8 11 8 8 7 9 9 9 16 16 17 13 11 10 10 15 15 14 15 26 21 16 9 9 13 17 9 9 10 10 10 9 9 9 13 11 11 16 17 10 8 8 6 6 8 10 8 7 7 10 10 10 8 6 6 8 8 8 8 8 10 10 10 11 18 8 8 8 8 8 10 8 10 10 16 21 10 10 10 12 12 16 19 14 12 14 12 14 16 19 14 10 10 8 8 8 10 11 11 13 10 10 11 8 8 8 8 8 8 7 8 8 8 10 10 11 11 12 19 23 17 10 9 10 10 6 6 8 6 8 12 15 15 21 14 17 17 21 23 22 19 16 16 18 15 11 15 8 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no398_b13.b1 MSMg01no398_b13.b1 CHROMAT_FILE:
MSMg01no398_b13.b1 PHD_FILE: MSMg01no398_b13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:44 2005
         (549 letters)



>mm_chr18_66864120_66865069
          Length = 950

 Score =  928 bits (480), Expect = 0.0
 Identities = 507/516 (98%), Gaps = 1/516 (0%)
 Strand = Plus / Minus

                                                                       
Query: 35  cattgttggactagctggaccacagcctgtaagccactctactgagtacatatacacatg 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 950 cattgttggactagctggaccacagcctgtaagccactctactgagtacatatacacatg 891

                                                                       
Query: 95  gattcattatatctattaattttgtacattctatcagctctgttcctctagagaactcta 154
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 890 gattcattatatctattaattgtgtacattctatcagctctgttcctctagagaactcta 831

                                                                       
Query: 155 atacagtatgtataataaatggtttttgttttttgtttttgtcttcttcttgaaaaaaag 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 atacagtatgtataataaatggtttttgttttttgtttttgtcttcttcttgaaaaaaag 771

                                                                       
Query: 215 aaaagaaaagaaatagaaaattatttgttaggggaaatttatagatggtatttgagggat 274
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 770 aaaagaaaagaaatagaaaattatttgttaggggaaatgtatagatggtatttgagggat 711

                                                                       
Query: 275 ataaagcctcaattaggtaggaatgaagttgatattttcatttttggtgcctggttaatt 334
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 aaaaagcctcaattaggtaggaatgaagttgatattttcatttttggtgcctggttaatt 651

                                                                       
Query: 335 tgtttgcagagaggtaagtcttgctacacatctcaaggaggtctcattatatagcccatg 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgtttgcagagaggtaagtcttgctacacatctcaaggaggtctcattatatagcccatg 591

                                                                       
Query: 395 ttctcctcagattcatatcagccttcctgcctcggcttcttaagtgataggagtacagaa 454
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 590 ttctcctcagattcatatcagccttcctgccttggcttcttaagtgataggagtacagaa 531

                                                                       
Query: 455 atatatcacagtgtccagcttgatttttttttttaaaat-cctattcattgttcagcaca 513
           ||||| |||||||||||| ||||||||||||| |||||  ||||||||||||||||||||
Sbjct: 530 atataccacagtgtccagtttgatttttttttataaaaagcctattcattgttcagcaca 471

                                               
Query: 514 ggaaaatactgttatccttatgattatagatgaaaa 549
           ||||||||||||||||||||||||||||||||||||
Sbjct: 470 ggaaaatactgttatccttatgattatagatgaaaa 435


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space:   506660
Effective search space used:   506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information