BAC Information

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BAC

Clone NameMSMg01-398C24
Chromosome18 (Build37)
Map Location 41,449,594 - 41,449,962
singlet/doubletsinglet
Overlap genenone
Upstream geneKctd16, EG225416
Downstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398C24.T7 (MSMg01no398_c24.b1)MSMg01-398C24.TJ (MSMg01no398_c24.g1)
ACCAG498350AG498351
length751753
length of high quality
(start - end)		515 (73 - 587)497 (77 - 573)
definitionCHROMAT_FILE: MSMg01no398_c24.b1 PHD_FILE: MSMg01no398_c24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:51 2005CHROMAT_FILE: MSMg01no398_c24.g1 PHD_FILE: MSMg01no398_c24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:10:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGAGTTTCCGCTAGAGTGTCTATTTCTTTTTTTAAATATTTT
TTATTATTGTGTATTTTCCTCAATTACATTTAGAATGCTATCCCAAAAGT
CCCCCATACCCTCCCCCACACTTCCCTACCCACCCATTCCCGTTTTTTGG
CCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGTGTGTCCAATGGG
CCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAG
CTAGAGTCAAGAGCTCCGGTATACTAGTTAGTTCATAATGTTGTTGCACC
TACAGGGTTGCAGATCTCTTTAGCTCCTTGGATACTTTCTCTAGCTCCTC
CATTGGGGGCCGTGTGCTCTATTTCTTAATGCAGGCAGCATCAACACACC
TCAGTCTCTTCAACTAAAGAATATTGGACAGGCTTTTAAAACATTCTATC
ATATTCTTCATCCTAGAAAAAAAACTTACAAAGAAAAGCAAATGACTCAA
CCTCCAAATACATTTATCCTCCTGAAGTTGTTTATAAGATATAGAAGTTC
CCTGGTAGAATTTTAGGGGTCGTTGATGTATATGATGATATAATTGGCGA
ATAGCAATTCTTTGACTTCTTCCCTTTCAGTTTGTATCACTTCGATCTCC
TGCAGTTTTCAAATGCTCTAGTTAAAACTCNAATACTACCNTGAATAGAA
G

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCTG
AGAAGCACCTGAAAAAATGCTCAGCATCCTTAATCATCAAGGAAATGCAA
ATCAAAACAACCCTGAGTTTCTACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTTCATTGTTTGTGGGATTGCAAGCTTGTACAACCCCTCTGGAAA
TCTGTCTGGTGGTTCCTTAGAAAATTGGACATAGTACTACTGGAGGATCC
CGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTAGTAAGA
AAGAAACATGCTCCACTATGTTCATAGCAGTCTTATTGATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAAT
GTGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATTAAATTCCTAGGCAAATGGTTGGACCTGGAAGGCATCATCCTGAGT
GAGGTAACCCAATCACAAACGAACTCACACAATATGTACTCACTGATAAG
TGGATATTAGCCCAGAAACTTAATATTCCTGAGATATAAGAGACAGTTTG
TGGAACACCTGAAACTGAAGAAAAAAGGAAACCCAAAGGGGGACACTCTT
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_c24.b1 MSMg01no398_c24.b1 CHROMAT_FILE:
MSMg01no398_c24.b1 PHD_FILE: MSMg01no398_c24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:10:51 2005
         (515 letters)



>mm_chr18_41449044_41449962
          Length = 919

 Score =  663 bits (343), Expect = 0.0
 Identities = 361/369 (97%), Gaps = 4/369 (1%)
 Strand = Plus / Minus

                                                                       
Query: 151 ggcatataaagtttgtgtgtccaatgggcctctctttccagtgatggccgactaggccat 210
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ggcatataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactaggccat 860

                                                                       
Query: 211 cttttgatacatatgcagctagagtcaagagctccggtatactagttagttcataatgtt 270
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 859 cttttgatacatatgcagctagagtcaagagctccgggatactagttagttcataatgtt 800

                                                                       
Query: 271 gttgcacctacagggttgcagatctctttagctccttggatactttctctagctcctcca 330
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gttgcacctatagggttgcagatctctttagctccttggatactttctctagctcctcca 740

                                                                       
Query: 331 ttgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtctcttca 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 739 ttgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtcttttca 680

                                                                       
Query: 391 actaaagaatattggacaggcttttaaaacattctatcatattcttcatcctag----aa 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||
Sbjct: 679 actaaagaatattggacaggcttttaaaacattctatcatattcttcatcctagaaaaaa 620

                                                                       
Query: 447 aaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctgaagt 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctgaagt 560

                    
Query: 507 tgtttataa 515
           |||||||||
Sbjct: 559 tgtttataa 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 919
Length adjustment: 10
Effective length of query: 505
Effective length of database: 909
Effective search space:   459045
Effective search space used:   459045
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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