BAC Information

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BAC

Clone NameMSMg01-398M20
Chromosome18 (Build37)
Map Location 62,123,188 - 62,123,677
singlet/doubletsinglet
Overlap geneSh3tc2
Upstream geneCamk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r, A630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3
Downstream geneAdrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-398M20.T7 (MSMg01no398_m20.b1)MSMg01-398M20.TJ (MSMg01no398_m20.g1)
ACCAG498819AG498820
length745665
length of high quality
(start - end)		510 (52 - 561)---
definitionCHROMAT_FILE: MSMg01no398_m20.b1 PHD_FILE: MSMg01no398_m20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:39 2005CHROMAT_FILE: MSMg01no398_m20.g1 PHD_FILE: MSMg01no398_m20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:11:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCACTATTCCATGCTGTAACTGAGACAAACCTTACAGCA
GAAACCAGAGGATAGGCAGGAGTATAGCTTCTGCAATATGGTAGTAGGGA
CCTGTCTTACAGTTTTACTGCTGTGAACAGATATCTTGAACCTGTCTTAG
TTAGGGTTTCCATACTGTGGAGGGATACCATGACCAAAGCAACTCTTCAA
AAGTACCATACTTAATCAGGGCTGGCCTAAAGGTTCAGAGGTTCAGTCCA
TTATCATCATGGCATGGCAGCATGAAGGTAAATTTGGTGCTAGAAGAGCC
AAGAGTTCTACATCTTGATACAAAGGCAGCAGCAGGAAAGTGGCTTCAGC
AGGTGACCAACAGAAGGGTCTCTTCCATACTGGGCAGACCTGAGCATAGG
ACCTCAAAGCCCACCCCCACAGTAACGCCCTTCCTCCAACAAGGCCACAC
CCACTCCAACAAGGCCACACCTCCTAATAGTGCCTCTTCCTGTGGGCCAA
GCATATTCAAACCACCATAGGACCATTTTTCTTTTCTTTTTGACTCTGAT
AGATCTCGAACTTGCTACTTAGATTAGATTAGGCTGGCCTGTAACTCTCA
GAGATCTGTCTGCCTCTGATTCCCCAAGGTTGGGATTGAAGGGATTCCCC
CCCCCCCTGGGGTTTTTGAAAGCCCCTTTTGAAAACTGATCCGGG

NNTTTTTTTTNNNNNNNCCGATGATAGTGGGTAGCCNGGGNGGCCGCCTG
GTTGCAAGNAAGTTGAGGNNNGACACCANNAGAATTTTTTTCTCCCCAGA
GAAAAAAATNGGNGGAGAAAAAAAAATTTTTNNTTNGNNGGGAGGGAAAA
AAAAAAAAAATTTTTTTCCCAAAAAATTGGGCCCAAATTTCTTTTTGGGA
ACCCCCCGGGGGGAAGAAAAAACCCCCCCGGGGGTTTTTTTTTTTGAAAA
AAACAAAAAAGCCGCCCTTTTTTTTTTTTTTTTTTTTCCAAAAAAAGAAG
AGATTTTTTTTTTTTTTTTTTAAAAAAAATTTTTTTTTAAAATTTGTTTT
GTTTTGTTCCTCCTCCCCCCCCCCCCAAAAAAAAAAAAAGGGGGGTTTTT
TTTTTTTTTAAAAAAAAAAAACACCCCCCCCCCCGCGGGGAGGGGGGGGG
GGAAGCAAAAACACCCCCCCCCGCGGGCGGGGGGGGGCGGGGGGGGCGGC
GCCCCCAAAAAAAAAAAAAAAAACACCAANNNNNNNNAACCCCCCCCACT
TTTTTTTTTTTTTTTCTATCTTTTTTTTTGTTTTTTTGTTTTTTACTTCT
TTTTTCTTACCTCTTCCTTTCTCCTTTTTTTTTTTTTATCAGCTCTTTCT
TTTTTTTTTTTGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no398_m20.b1 MSMg01no398_m20.b1 CHROMAT_FILE:
MSMg01no398_m20.b1 PHD_FILE: MSMg01no398_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:39 2005
         (510 letters)



>mm_chr18_62122968_62123877
          Length = 910

 Score =  940 bits (486), Expect = 0.0
 Identities = 489/490 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  atgctgtaactgagacaaaccttacagcagaaaccagaggataggcaggagtatagcttc 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 atgctgtaactgagacaaaccttacagcagaaaccagaggataggcaggagtatagcttc 280

                                                                       
Query: 81  tgcaatatggtagtagggacctgtcttacagttttactgctgtgaacagatatcttgaac 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 tgcaatatggtagtagggacctgtcttacagttttactgctgtgaacagatatcttgaac 340

                                                                       
Query: 141 ctgtcttagttagggtttccatactgtggagggataccatgaccaaagcaactcttcaaa 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgtcttagttagggtttccatactgtggagggataccatgaccaaagcaactcttcaaa 400

                                                                       
Query: 201 agtaccatacttaatcagggctggcctaaaggttcagaggttcagtccattatcatcatg 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 agtaccatacttaatcagggctggcctaaaggttcagaggttcagtccattatcatcatg 460

                                                                       
Query: 261 gcatggcagcatgaaggtaaatttggtgctagaagagccaagagttctacatcttgatac 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gcatggcagcatgaaggtaaatttggtgctagaagagccaagagttctacatcttgatac 520

                                                                       
Query: 321 aaaggcagcagcaggaaagtggcttcagcaggtgaccaacagaagggtctcttccatact 380
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 521 aaaggcagcagcaggaaagtggcttcagcaggtgaccaacagaaggttctcttccatact 580

                                                                       
Query: 381 gggcagacctgagcataggacctcaaagcccacccccacagtaacgcccttcctccaaca 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 gggcagacctgagcataggacctcaaagcccacccccacagtaacgcccttcctccaaca 640

                                                                       
Query: 441 aggccacacccactccaacaaggccacacctcctaatagtgcctcttcctgtgggccaag 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 aggccacacccactccaacaaggccacacctcctaatagtgcctcttcctgtgggccaag 700

                     
Query: 501 catattcaaa 510
           ||||||||||
Sbjct: 701 catattcaaa 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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