Query= MSMg01no398_p16.b1 MSMg01no398_p16.b1 CHROMAT_FILE:
MSMg01no398_p16.b1 PHD_FILE: MSMg01no398_p16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:52 2005
(567 letters)
>mm_chr18_19273566_19274532
Length = 967
Score = 977 bits (505), Expect = 0.0
Identities = 551/567 (97%), Gaps = 2/567 (0%)
Strand = Plus / Minus
Query: 1 aatgacaataatggctccacagtaatatcgataatgatgcatataatgaactggacttca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 662 aatgacaataatggctccacagtaatatcgataatgaggcatataatgaactggacttca 603
Query: 61 ctttggagatcctcagtgaccaaaaagagaattgcaaatgaagtggaaatttagagaaga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 ttttggagatcctcagtgaccaaaaagagaattgcaaatgaagtggaaatttagagaaga 543
Query: 121 ttagtcaggggtaaaaagacaagcctattttgaaaggtaaaaattcaggttgtttgcaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 542 ttagtcaggggtaaaaagacaagcctattttgaaaggtaaaaattcaggttgcttgcaat 483
Query: 181 taggtataatgagattctactgttaagtgaaaatccattcaatgacagaaataattttan 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 482 taggtataatgagattctactgttaagtgaaaatccattcaatgacagaaataa-tttaa 424
Query: 241 at-angagaaaatctatgagaggagacagcaaggcccatatatgcagaatagatgcttca 299
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ataatgagaaaatctatgagaggagacagcaaggcccatatatgcagaatagatgcttca 364
Query: 300 acctgaattccacccctgaaaagcacaatgaatctattccaccacagtccattttgatca 359
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 363 acctgaattccatccctgaaaagcacaatgaatctatttcaccacagtccattttgatca 304
Query: 360 attccaccaatgtatcatgttgaataacacaggatcttgtattggattctgaagtttttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 attccaccaatgtatcatgttgaataacacaggatcttgtattggattctgaagtttttg 244
Query: 420 ctagtattttaaattatcattttacaatctatttatttcattaacaatggaattcacagc 479
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 243 ctagtattttaaattatcattttacaatctttttatttcattaacaatggaattcacagc 184
Query: 480 caggcatggtggcacacacctttaatcccagtactcaggaagcagaggcaggcagatttc 539
| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 183 cgggtgtggtggcgcacacctttaatcccagcactcaggaagcagaggcaggcagatttc 124
Query: 540 tgatttcgaagccagcctggtctacaa 566
||| |||||||||||||||||||||||
Sbjct: 123 tgagttcgaagccagcctggtctacaa 97
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no398_p16.g1 MSMg01no398_p16.g1 CHROMAT_FILE:
MSMg01no398_p16.g1 PHD_FILE: MSMg01no398_p16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:11:52 2005
(233 letters)
>mm_chr18_19124083_19124716
Length = 634
Score = 362 bits (187), Expect = e-104
Identities = 220/235 (93%), Gaps = 11/235 (4%)
Strand = Plus / Plus
Query: 1 ctacattccagnt-taatcttatagacctagaagttatttgtatgtgccatcttgccaga 59
||||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 ctacattccag-tctaatcttatagacctagaagttatttggatgtgatatcttgccaga 259
Query: 60 gatttgctgctggattaaaatttctctttactatgaatgtaggattcactttttaaaaaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gatttgctgctggattaaaatttctctttactatgaatgtaggattcactttttaaaaaa 319
Query: 120 tgaagatgggagggttttgttgttttatttcattttattccataaataagtatttttta- 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 320 tgaagatgggagggttttgttgttttatttcattttattccataaataagtaat----ag 375
Query: 179 --ttcattttttacaagtatagaaatattagag--ttgaataggcagttaaataa 229
||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 gattcattttttacaagtatagaaatattagagagttgaataggcagttaaataa 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 634
Length adjustment: 9
Effective length of query: 224
Effective length of database: 625
Effective search space: 140000
Effective search space used: 140000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
