Query= MSMg01no400_i04.b1 MSMg01no400_i04.b1 CHROMAT_FILE:
MSMg01no400_i04.b1 PHD_FILE: MSMg01no400_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:51 2005
(502 letters)
>mm_chr18_65260415_65261316
Length = 902
Score = 890 bits (460), Expect = 0.0
Identities = 491/508 (96%), Gaps = 12/508 (2%)
Strand = Plus / Plus
Query: 1 agaggtaggggctagagaatgagatgttcagagtcattcttggctacattaaaagttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaggtaggggctagagaatgagatgttcagagtcattcttggctacattaaaagttttg 260
Query: 61 agggagcttggggtaccacatgatgctgtctcgtaaggagctgaagacagcatagatgag 120
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 agggagcttggggtaccacatgatgctgtcttgtaaggagctgaagacagcatagatgag 320
Query: 121 caaagacatcacgctttgctcacccttctctatctagaagtggggtgaattctaccgggc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaagacatcacgctttgctcacccttctctatctagaagtggggtgaattctaccgggc 380
Query: 181 taagctgattccatctgttggcttatcctgtaccttctggttcttgccttttcaaatgct 240
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taagctgattccatctgttagcttatcctgtaccttctggttcttgccttttcaaatgct 440
Query: 241 tgcttttgtgttttttgt------cactgtggaggcaagctcgagttagttatttagaca 294
|||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcttttgtg------gagccagccactgtggaggcaagctcgagttagttatttagaca 494
Query: 295 gttccagaagttggagaaaaaggctctgtggtgaagagcgcttgctcatctcccggtggg 354
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 gttccagaagctggagaaaaaggctctgtggtgaagagcgcttgctcatctcccggtggg 554
Query: 355 gggagctgaatttagttcctagtagtgtcaggcacttcacaactgcttgtaactccagct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 gggagctgaatttagttcctagtagtgtcaggcacttcacaactgcttgtaactccagct 614
Query: 415 gtagggcatcggacactacctctggcctctgtgggcatccatgttgcacataaataagag 474
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 615 gtagggcatcggacactacctctggcctctgtgggcatccatgctgcacataaataagag 674
Query: 475 atacacattttaaaagagagaaattcca 502
||||||||||||||||||||||||||||
Sbjct: 675 atacacattttaaaagagagaaattcca 702
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space: 438864
Effective search space used: 438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no400_i04.g1 MSMg01no400_i04.g1 CHROMAT_FILE:
MSMg01no400_i04.g1 PHD_FILE: MSMg01no400_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:13:51 2005
(316 letters)
>mm_chr18_65464423_65465138
Length = 716
Score = 528 bits (273), Expect = e-154
Identities = 304/321 (94%), Gaps = 12/321 (3%)
Strand = Plus / Minus
Query: 1 caagtgtatgcagcatgagccaaacacaagatggtggtgacagaagcctaggagaagctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 caagtgtatgcagcatgagccaaacacaagatggtggtgacagaagcctaggagaagctg 456
Query: 61 ggcaaaggggaacggatgagaccgaggtcatttcccccctgtctcctctttctagctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ggcaaaggggaacggatgagaccgaggtcatttcccccctgtctcctctttctagctgtc 396
Query: 121 tcacaggagtgacacatacatctgtcaaggctgaaaccaacaactccacaggccacattt 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tcacaggagtgacacatacatgtgtcaaggctgaaaccaacaactccacaggccacattt 336
Query: 181 atggcggatctgaggccagaacccatcaaagtgtaattcctatgaagacggaaaagggaa 240
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct: 335 atggcggatctgagcccagaacccgtcaaagtgtaattcctatgaagacagaaaagggaa 276
Query: 241 ctatcgag------tttttttgtgggaaacatgtgcgctcttcagatgatctcacaaaca 294
|||||||| | ||||||| |||||||||||||||||||||||||||||||
Sbjct: 275 ctatcgagagcaagt------gtgggaaccatgtgcgctcttcagatgatctcacaaaca 222
Query: 295 caccttgtacttcatctccca 315
|||||||||||||||||||||
Sbjct: 221 caccttgtacttcatctccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space: 217049
Effective search space used: 217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
