BAC Information

Click to search

BAC

Clone NameMSMg01-401D04
Chromosome18 (Build37)
Map Location 13,505,972 - 13,506,353
singlet/doubletsinglet
Overlap genenone
Upstream geneLama3, 2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354
Downstream geneLOC665379, LOC100040358, Zfp521, LOC100040094, LOC100040103, LOC100040391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401D04.T7 (MSMg01no401_d04.b1)MSMg01-401D04.TJ (MSMg01no401_d04.g1)
ACCAG500640AG500641
length770753
length of high quality
(start - end)
507 (50 - 556)527 (78 - 604)
definitionCHROMAT_FILE: MSMg01no401_d04.b1 PHD_FILE: MSMg01no401_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:46 2005CHROMAT_FILE: MSMg01no401_d04.g1 PHD_FILE: MSMg01no401_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:14:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCCTGATTTCTCTCAAGACTTTTATCATGAATGGGTGTTGGAT
CTTGTCAAATGCTTCTCTGAGTCTAAGGAGATGATCATGTGGTTTTTGTC
TTTGAGTTTGTTTATATAGTGGATTACGTTGATAGATTTCCGTATATTAT
ACCATCCCTGCATCCCTGGGATGAAGCCTACTTGGTCTTGATGGATGATC
ATTTTGATGTGTTCTTGGATTTGGTTTGCAAGGATTTTATTGAGTATTTT
TGCATCGATATTCATAAGGGTAATTGGTCTGAAGTTCAATTTCTTTTTGG
ATCTTTGTGTGGCTTAGTTATCAGAGTAATTGTGGCTTCATAGAATGAAT
TGGGTAGAGTACCTTCTGTTTCTATTTTGTGGAATAGTTTGAGGAGAGTT
GGAATTAGGTCTTCTTTGAAGGTCTGATAGAAGTTTGCATTAAACCTATC
TGGTCCTGGGCTTTTTTGGGCTGGGAGACTATTAATGACTGCTTCTATTT
CTTTAGGGGAAATGGAACTGTTAAGATCATTAATCTGATCCTGATTTAAC
TTTGGTACCTGGTATCCTGCTAGAAAGTTGTCCCATTCATTCCGGTCTTT
CTCGTTTTGTTGAGCATTTATTTTTCGTATTATGATCTGCTGTACGCTTT
CGAATTTCCTTACTTTTTCTTCTTTTATGCCCTTCTTCCTTTTTTTTTCA
TTCTCTGTTAACTAACCATA
NTCCCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGGGAAAATAAAGATAACAAC
ATATTGGGCTCAGTTCTGCTCTTCAGGGAAAACTGCTTCCAGACTTCAAA
CCCAGTCTTCTCTTCACGCTTCATTCTAGAAGTCGATGGGTAGAGCCAAC
CAGAACCCAGAGGTCATCAACACAGGGATGTATCCATCAGAAATGAGACT
GTAAAGTCAGGTTGGCAAAATGGCTCAGCAGGTAAAAGTGCTTGCTGTGT
GAAACTTGTCAGCATGTGTTTTTTCTCCTGAATACAAAGCAAAGTAAAAC
AAGATGGTGGGATATGGTAGCTTGCACCTGTAATCCCCTCATTCTTACAG
AAAGATTGGAAGCAGAGACAGAAGAATCCTCCAGAAGCTTGAGGGCCAGC
TATCCCAGAGTATACAACACGACAGCTATAAGATAGACCCTGACCCAACA
AAGGTGGAAGGTCAGTTCTTGACAGGTGTCCTCTGATGTCTCCGTACACA
CTGTGGCACCTGAGCCCTTATAGACATACCAACTAAAAGGTTATGACGTT
TAGTGAATTACTGAAGAACATGCGTAATTCCAAGAGCACATATAACCAAT
GTGCTCTCCACACAATCAGGTTGCCAGGCTGCCTGGGGTGGGGAAAGGAT
TGGTCCCTGGCTTGGTTTCCCCGCTCTTCTCAGGTAAAGTCTTTCCCCTG
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_d04.g1 MSMg01no401_d04.g1 CHROMAT_FILE:
MSMg01no401_d04.g1 PHD_FILE: MSMg01no401_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:46 2005
         (527 letters)



>mm_chr18_13505972_13506898
          Length = 927

 Score =  669 bits (346), Expect = 0.0
 Identities = 373/382 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagggaaaataaagataacaacatattgggctcagttctgctcttcagggaaaactgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 382 agagggaaaataaagataacaacatattgggctcagttctgctcttcaggggaaactgct 323

                                                                       
Query: 61  tccagacttcaaacccagtcttctcttcacgcttcattctagaagtcgatgggtagagcc 120
           ||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct: 322 tccagacttcaaacccagtcttcccttcaagcttcattctagaagtcgataggtagagcc 263

                                                                       
Query: 121 aaccagaacccagaggtcatcaacacagggatgtatccatcagaaatgagactgtaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 aaccagaacccagaggtcatcaacacagggatgtatccatcagaaatgagactgtaaagt 203

                                                                       
Query: 181 caggttggcaaaatggctcagcaggtaaaagtgcttgctgtgtgaaacttgtcagcatgt 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 202 caggttggcaaaatggctcagcaggtaaaagtgcttgctgtgtgaaacttgtcatcatgt 143

                                                                       
Query: 241 gttttttctcctgaatacaaagcaaagtaaaacaagatggtgggatatggtagcttgcac 300
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 142 gttcagtctcctgaatacaaagcaaagtaaaacaagatggtgggatatggtagcttgcat 83

                                                                       
Query: 301 ctgtaatcccctcattcttacagaaagattggaagcagagacagaagaatcctccagaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  ctgtaatcccctcattcttacagaaagattggaagcagagacagaagaatcctccagaag 23

                                 
Query: 361 cttgagggccagctatcccaga 382
           ||||||||||||||||||||||
Sbjct: 22  cttgagggccagctatcccaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)