Query= MSMg01no401_f21.b1 MSMg01no401_f21.b1 CHROMAT_FILE:
MSMg01no401_f21.b1 PHD_FILE: MSMg01no401_f21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:58 2005
(462 letters)
>mm_chr18_16678343_16679203
Length = 861
Score = 820 bits (424), Expect = 0.0
Identities = 448/456 (98%), Gaps = 1/456 (0%)
Strand = Plus / Minus
Query: 7 gaattcctatgctgtcccaacccacagcactggtgtcatcccctctgcttcagtagtatt 66
|||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 504 gaattcctatgctgccccaacccacagcactggtgtcattccctctgcttcagtagtatt 445
Query: 67 cctaggtggactgcatggggattgtttgtgaggtgtcctggatttctgcatatcttctta 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctaggtggactgcatggggattgtttgtgaggtgtcctggatttctgcatatcttctta 385
Query: 127 actctttgtaaggtctggttcaagatggaccgtgacttggattggctttttttggtaaga 186
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 actctttgtaaggtctggttcaagatggaccgtgacttggattggc-ttttttggtaaga 326
Query: 187 gatttatgaacatgacaaacagtcaagagtctaatgacagtttagtcccctgagacacaa 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gatttatgaacatgacaaacagtcaagagtctaatgacagtttagtcccctgagacacaa 266
Query: 247 agagctttccacttttacagaaaggaatttaccattattctgtggttagtgcttacaaaa 306
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 agagctttccacttttacagaaaggaatttaccattagtctgtggttagtgcttacaaaa 206
Query: 307 gaagctggaaagaacccagttgtccctcaacagaggaatggatacagaaaatgtgataca 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaagctggaaagaacccagttgtccctcaacagaggaatggatacagaaaatgtgataca 146
Query: 367 tttacacaatggagtaatactcagctattaaaaacaatgagtttatgaaattcttaggca 426
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 145 tttacacaatggagtaatactcagcaattaaaaacaatgagtttatgaaattcttaggca 86
Query: 427 aatggatgtatctggagggcattatcttgagtaagg 462
||||||||||||||||||| || ||| |||||||||
Sbjct: 85 aatggatgtatctggagggtatcatcctgagtaagg 50
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 861
Length adjustment: 10
Effective length of query: 452
Effective length of database: 851
Effective search space: 384652
Effective search space used: 384652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_f21.g1 MSMg01no401_f21.g1 CHROMAT_FILE:
MSMg01no401_f21.g1 PHD_FILE: MSMg01no401_f21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:14:58 2005
(500 letters)
>mm_chr18_16510633_16511529
Length = 897
Score = 913 bits (472), Expect = 0.0
Identities = 492/500 (98%), Gaps = 3/500 (0%)
Strand = Plus / Plus
Query: 1 tacatattgatcagaaggcagccaggagggaattctgcattgggtagaacctgagcctat 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tacatattgatcagaaggcagccaggagggaattctgcattgagtagaacctgagcctat 260
Query: 61 gagccttcaaagcctgcctccataatgatatgcttcctccaacaaagccatgccaatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagccttcaaagcctgcctccataatgatatgcttcctccaacaaagccatgccaatttc 320
Query: 121 aacaaagccacacctcctaatagtggcatttcccatgggccaagcatattcaaatcacca 180
||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||
Sbjct: 321 aacaaagccacacctcctaatagtgacatttcccatgggtcaagcatattcaaaccacca 380
Query: 181 ccctaggtaagccacgagaaacgaccaaagaagaggaaacaagcatagattttttcattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccctaggtaagccacgagaaacgaccaaagaagaggaaacaagcatagattttttcattt 440
Query: 241 gcttagttgtatttcctaccatttgtgacttagaaaaattcattaagccatcttgattaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttagttgtatttcctaccatttgtgacttagaaaaattcattaagccatcttgattaa 500
Query: 301 agaaatagtcatttactagctagctatgcattatgctgtaagcctagagcactggcattt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agaaatagtcatttactagctagctatgcattatgctgtaagcctagagcactggcattt 560
Query: 361 ttgtgaggtttagaacattctgagcaaaatgtctttcaaaaatcaaacaatacccccccc 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 ttgtgaggtttagaacattctgagcaaaatgtctttcaaaaatcaaacaacacccccccc 620
Query: 421 ccaaaaaaagaaagaagtagcaaagaagagagaagatatgaggagaggtgagggttacta 480
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaaaa---gaaagaagtagcaaagaagagagaagatatgaggagaggtgagggttacta 677
Query: 481 aaaatcaaaagccattataa 500
||||||||||||||||||||
Sbjct: 678 aaaatcaaaagccattataa 697
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 897
Length adjustment: 10
Effective length of query: 490
Effective length of database: 887
Effective search space: 434630
Effective search space used: 434630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
