Query= MSMg01no401_j20.b1 MSMg01no401_j20.b1 CHROMAT_FILE:
MSMg01no401_j20.b1 PHD_FILE: MSMg01no401_j20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:17 2005
(426 letters)
>mm_chr18_39217099_39217922
Length = 824
Score = 687 bits (355), Expect = 0.0
Identities = 407/425 (95%), Gaps = 4/425 (0%)
Strand = Plus / Minus
Query: 3 cccccgcccccttcagaataggctgtaaatcatttacttgactgctttaccgtgggacag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 cccccgcccccttcagaataggctgtaaatcatttacttgactgctttaccgtgggacag 455
Query: 63 ggggagctgctgggctttaaggaggccagctcctctcttgggggcgggggggggggtaag 122
||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||
Sbjct: 454 ggggagctgctgggctttaaggaggccagctcctctcttgggg--gtgtgggggggtaag 397
Query: 123 aatgaacctctgcttaagggctggagaagccaaagccccagagagatcattagccaaggt 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aatgaacctctgcttaagggctggagaagccaaagccccagagagatcattagccaaggg 337
Query: 183 ttactttgacttcgaaaagccagctcatagcccctacctggggctaacagagaaggacgc 242
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aaacattgacttcgaaaagccagctcatagcccctacctggggctaacagagaaggacgc 277
Query: 243 tgaacttc-gtgattgggtcagataccctgcctttgagctccaacggtctagacaccatg 301
||||| || | || ||||||||||||||||||||| |||||||||| | ||||||||||
Sbjct: 276 tgaac-tctgggacagggtcagataccctgcctttgggctccaacggcccagacaccatg 218
Query: 302 attcctcagaatcaagaaagggcacaaaggcctggactcaaaaggcctgacctgagtcta 361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 217 attcctcagaatcaagaaagggcacaaaggcctggactcaaaaggcttgacctgagtcta 158
Query: 362 aatcctgactctgccacttactagctcagaactatgtttaactccctgcgcctgatctat 421
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 157 aatcctgactctgccacttactagctcagaactatgtttaactccctgtgcctgatctat 98
Query: 422 aaaat 426
|||||
Sbjct: 97 aaaat 93
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 824
Length adjustment: 9
Effective length of query: 417
Effective length of database: 815
Effective search space: 339855
Effective search space used: 339855
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no401_j20.g1 MSMg01no401_j20.g1 CHROMAT_FILE:
MSMg01no401_j20.g1 PHD_FILE: MSMg01no401_j20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:17 2005
(244 letters)
>mm_chr18_39074359_39075001
Length = 643
Score = 387 bits (200), Expect = e-112
Identities = 233/244 (95%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ctgtcaccaaattccacctgtctcttaggatgcctccccagttagaagcacagacctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 ctgtcaccaaattccacctgtctcttaggatgcctccccagttagaagcgcagacctatt 260
Query: 61 ggacagcctgactccactgccctttggtagctgtgggccgacaagtaagtggccccctcc 120
|||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 261 ggacagtctgactccactgctctttggtagctgtgggccggcaagtaagtgg-cccctct 319
Query: 121 actgagcctgagtcctgcatccatgccagcctctgattctctgaggtgttggcagactta 180
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgagcttgagtcctgcatccgtgccagcctctgattctctgaggtgttggcagactta 379
Query: 181 aagttgagcccagtgccgggatccagaaaggaccagaacactggtgactaggacaatgac 240
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctgagcccagtgccaggatccagaaaggaccagaacactggtgactaggacaatgac 439
Query: 241 agtt 244
||||
Sbjct: 440 agtt 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
