BAC Information

Click to search

BAC

Clone NameMSMg01-401O12
Chromosome18 (Build37)
Map Location 42,391,503 - 42,582,357
singlet/doubletdoublet
Overlap geneLars, EG625929, LOC100042757, Rbm27, Pou4f3
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177
Downstream geneLOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b, LOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-401O12.T7 (MSMg01no401_o12.b1)MSMg01-401O12.TJ (MSMg01no401_o12.g1)
ACCAG501180AG501181
length751761
length of high quality
(start - end)
124 (129 - 252)265 (329 - 593)
definitionCHROMAT_FILE: MSMg01no401_o12.b1 PHD_FILE: MSMg01no401_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:38 2005CHROMAT_FILE: MSMg01no401_o12.g1 PHD_FILE: MSMg01no401_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,391,503 - 42,391,626)(42,582,108 - 42,582,357)
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAGAGGCG
CGGAATTCCAGAATGTTCCGACCAGAGTGTCTACCCAAAAGGCAAATGTA
TCTATGGAAAGGCATACAACACCATCTAGATTTACTTTCACCAAATAGCT
ACTAGAAACACAGCTTCATCAAAATGAGTGGGGGAAACAGAGAGGAGCCA
TAGAATTAAAGCAAGGAGAACAGATTTAAGAAGCAGGGAAATCTATAATG
GTCAAGAGATCTCAGCTCCAGCAGAGCAGCAGCAACCCATCCAGAGAACC
TGCTGCAGTGGCTGGGAGTGTTTTCTATTATGCAACCAGTCACACACTGA
AACGAGGGACAAGCTGATAAAAATGCAGGGCTGTAACTTTTGGGATGACA
TGCTACGTGCATGGCAAGTATTAATTCTAGGGAAAAACAAAAACTGGATT
AGAAAATACTCACTACATACTACAGTCAGATTAGCCATGTCTCAGAAATA
TAAGCAATGACTAATCTAGTACATATTATAAATACCTCTTATGTGTGAAA
GACGAAGAAGCATATGTAAGATATGAAGCAGTATTAAAAAATTACAATCT
TGATTTTTTTTTCATAGAAGTCAGTGGCTAAACCTACGGAACACAGCAAA
ACAAAAACTATGCTCCTGTCGATGTGGTAGCACAGCTATAATCCCAGCTA
CTATAGGTTTAACTGAGAAGACGATGGCTTCATCCTCGCCTGGGCTACCT
T
NCCGATGATGNTGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATCCTGCGAATCTTAGCCTCCAT
TCTAGTATAAAGACCCCCACATCAGGTAGGAGCGGCATAGATATGAAACT
GGATCAAGCTAAGCAAGCCGTTTCTACTCAGGTGTGGCTACAAAGAGGGC
AGATAGAGACTCAGAATCTGACCCAAAGCAACAGGTTGAGAATTGTAAAG
TCCTATATAAAGGGCAGGAGGTTTCTCGTAAAAAGGAAGGGGTGTGGCCT
ACAAAAGTTCCCTGAGGACTTGTTCNTGTCCCACAAAAGCTTTTAAAATA
GGCACCTCTGGCATTATTTTGGGTAAAGACAAGAGCCACTAAGGCTCTTT
ACTTTCTGGAATACTAAGCTGGCACTCACTTTCCTTTAGGAATCTCTCCA
TTTTCCAGAGGTGAGAAGGGTAAGTCCTTCCAGGACTCTCTTTGTAGCTA
AGGTCTACACGTGCAATTGATAAATTCTATGAGGTCGAAATACCCTGGCA
AATCTTGAAGGCAGAAATGAATGGAAGTGTCGTTTTCTGTTTTCAACTGG
CAAGAATAAGTACAGAGAGACTAGCCCGGTAACTAGTCCATTTAAGAAAC
AATGAAGGATTCCTGAGTACAAATAGCACCCAAATGATATTTGTTCAAGT
CCTTAGTCCCACAAGGCAGGGTGGTACTTCTTTCCCATTTCCACCCCGGC
CAGGTACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no401_o12.b1 MSMg01no401_o12.b1 CHROMAT_FILE:
MSMg01no401_o12.b1 PHD_FILE: MSMg01no401_o12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:38 2005
         (124 letters)



>mm_chr18_42391303_42391826
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gatttactttcaccaaatagctactagaaacacagcttcatcaaaatgagtgggggaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gatttactttcaccaaatagctactagaaacacagcttcatcaaaatgagtgggggaaac 260

                                                                       
Query: 61  agagaggagccatagaattaaagcaaggagaacagatttaagaagcagggaaatctataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagaggagccatagaattaaagcaaggagaacagatttaagaagcagggaaatctataa 320

               
Query: 121 tggt 124
           ||||
Sbjct: 321 tggt 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no401_o12.g1 MSMg01no401_o12.g1 CHROMAT_FILE:
MSMg01no401_o12.g1 PHD_FILE: MSMg01no401_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:38 2005
         (265 letters)



>mm_chr18_42581893_42582557
          Length = 665

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 16  taaaataggcacctctggcattattttgggtaaagacaagagccactaaggctctttact 75
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 465 taaaataggcacctctggcattattttgggtaaagacaagagccacgaaggctctttact 406

                                                                       
Query: 76  ttctggaatactaagctggcactcactttcctttaggaatctctccattttccagaggtg 135
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttctggaatactaagttggcactcactttcctttaggaatctctccattttccagaggtg 346

                                                                       
Query: 136 agaagggtaagtccttccaggactctctttgtagctaaggtctacacgtgcaattgataa 195
           |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 agaagggtcaggccttccaggactctctttgtagctaaggtctacacgtgcaattgataa 286

                                                                       
Query: 196 attctatgaggtcgaaataccctggcaaatcttgaaggcagaaatgaatggaagtgtcgt 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 attctatgaggtcgaaataccctggcaaatcttgaaggcagaaatgaatggaagtgtcgt 226

                     
Query: 256 tttctgtttt 265
           ||||||||||
Sbjct: 225 tttctgtttt 216


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 265
Length of database: 665
Length adjustment: 9
Effective length of query: 256
Effective length of database: 656
Effective search space:   167936
Effective search space used:   167936
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)