BAC Information

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BAC

Clone NameMSMg01-402A03
Chromosome18 (Build37)
Map Location 26,017,384 - 26,017,645
singlet/doubletsinglet
Overlap geneLOC100041263
Upstream geneFhod3, 5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916
Downstream geneLOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402A03.T7 (MSMg01no402_a03.b1)MSMg01-402A03.TJ (MSMg01no402_a03.g1)
ACCAG501258AG501259
length760827
length of high quality
(start - end)
263 (75 - 337)80 (73 - 152)
definitionCHROMAT_FILE: MSMg01no402_a03.b1 PHD_FILE: MSMg01no402_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:46 2005CHROMAT_FILE: MSMg01no402_a03.g1 PHD_FILE: MSMg01no402_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:15:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTTTTTCCCTTAAAATACAATAGGTGATACATTTTAAATTTTC
ATTTTCCACGTGTATGCGATTGTACATGTTGTTCTAAAATGTATTTAATG
CAAAGTTTTGCACAAAACTTGCTAACTCATTTGTAAATGCTGATAAGTTT
CAAACTTGTTTAGATATTCTTACATGGAAAGGAGTATAAACTATGAATAA
ATACGATAATTTTATTTATTGATTTTTCAGTGCAAATAATAGATTCTTCC
CTACTTTCTCTACTTGTCTTTTACATCCAATATAACACTGAGTATAAAAA
TGTGGTAGCCACTCAGCTCAGCTTTGGCAACGATCTCTGAGAATCTGTCC
ACCTTTCCACAGATGCTATAGTAAAGATACAGTCTCCTAGATTAGCTTTA
CAGAAAGACAGTTCTTTAAGTAAGGAATCTTACGCTTAACTTATAAGCTC
CTTGTCATGAATTTCTTCAATTATTTTCCTGCGCTCCTTAACCTGAATAA
TTCCCTGCGCCTTCTCACTAATGCCATGCCACACCTTTATTCTATTCCTT
ATTTACACACTTCGATACCTTTTTTACAAATATCGGCTTCTAACGATGTC
TTATCCTTCACTAGGCTTAACTTCGCCCTCTTAACCCCCCCCAATTTACC
CCCTCTTTTTTTTTACTAACTTGTAACAAAGTCTCCTTCCGCGACTTTCT
CTCTTATTTG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAACAATGTGGGCTTGAGGGCATGGCAAAGT
GGTTGGGGATGGGAGGGGTCTGTTCTGGGCCTCCTTGTTCACCTGTGGAT
CTTCATAGGGTGGAGGGTGAGCCTGGGCTGTGGCTTTCTTTTATGACTGC
ACAGTAATTCACATGCTTCTCTCTGAAGGAACACAATGAGGGAGTGCTAA
TCCAGGGATAGGGAAGGGTTCCAGATTACCTCTAAAGTCCTGAGGTGTTG
ATCAAAGCTGTCATTATGATTATGCTCAGTGTCAGGCAAGGACAGGAAAG
GAGGCTACGTGTTCTGGTTTTGTCTCTCAGTATATGAGGTTAACCTCGTT
TCCTATGTGTAATCTATGGCGATTTAACATACTTTTCTGCATATCTTGGC
AATTATCATAAACCTGTTTACCCCCAATTTATCACGCCTGTATTTTGTTA
TTGTTTGTTTGTCTCGCTCCCATTGCCCTTTCTTGTCTCCCCTTCCTTTT
TCCCCCTCTCTTCATTTCTTTTCATCCTTCTCATTTTTTTCAATTTTCTC
CCCATTCTCACCTCCATTTATTTCCCTCCCTCTCCTTTTTTTCTGCATTA
TCTTCTCTCACCTTCCCCTCGTCCCCGCTCTATTCATTAACCTCCCTTCC
TATATTTTCCTTCCTCCGTACTATTTTTTTATTCTCACGCTTATACTTTA
CCTCTTCCTTCCTTCCTTCTTTACTCCTTTCATTTCACCTCCCCACCTAC
TCCTTCTTCTCCTCCCTCACTCTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_a03.b1 MSMg01no402_a03.b1 CHROMAT_FILE:
MSMg01no402_a03.b1 PHD_FILE: MSMg01no402_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:15:46 2005
         (263 letters)



>mm_chr18_26017184_26017845
          Length = 662

 Score =  470 bits (243), Expect = e-137
 Identities = 258/263 (98%), Gaps = 1/263 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caataggtgatacattttaaattttcattttccacgtgtatgcgattgtacatgttgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caataggtgatacattttaaattttcattttccacgtgtatgcgattgtacatgttgttc 403

                                                                       
Query: 61  taaaatgtatttaatgcaaagttttgcacaaaacttgctaactcatttgtaaatgctgat 120
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 taaaatgtttttaatgcaaagttttgcacaaaacttgctaactcatttgtaaatgctgat 343

                                                                       
Query: 121 aagtttcaaacttgtttagatattcttacatggaaaggagtataaactatgaataaatac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aagtttcaaacttgtttagatattcttacatggaaaggagtataaactatgaataaatac 283

                                                                       
Query: 181 gataattttatttattgatttttcagtgcaaataatagattcttccctactttctctact 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gataattttatttattga-ttttcagtgcaaataatagattcttccctactttctctact 224

                                  
Query: 241 tgtcttttacatccaatataaca 263
           |||||   |||||||||||||||
Sbjct: 223 tgtctgggacatccaatataaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 662
Length adjustment: 9
Effective length of query: 254
Effective length of database: 653
Effective search space:   165862
Effective search space used:   165862
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)