Query= MSMg01no402_f05.b1 MSMg01no402_f05.b1 CHROMAT_FILE:
MSMg01no402_f05.b1 PHD_FILE: MSMg01no402_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:10 2005
(462 letters)
>mm_chr18_39240389_39241250
Length = 862
Score = 801 bits (414), Expect = 0.0
Identities = 450/462 (97%)
Strand = Plus / Minus
Query: 1 ccctctgtccttccagcccttggccagcatccctatgcccacccatcagaaactgaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct: 662 ccctctgtccttccagcccttggccagcatccctatgcccacccaacagaaactaaaaaa 603
Query: 61 atggaaagatcacatcctaccctgaggtgatagggccatgctatgcagggccaaattgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atggaaagatcacatcctaccctgaggtgatagggccatgctatgcagggccaaattgct 543
Query: 121 gccatcttcagtcaggatgggcatgtttgccaaacgtcatcatggctgggcttattggct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gccatcttcagtcaggatgggcatgtttgccaaacgtcatcatggctgggcttattggct 483
Query: 181 attgatggctcatcttgaaatgaggggacaggagggtcatgggatcttcactgagagacc 240
|| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 482 atagatggctcatcttgaaatgaggggataggggggtcatgggatcttcactgagagacc 423
Query: 241 atccatccttttcaatcagttgtatgcaattctgcactaattgcacatggtctctgagac 300
|||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 422 atccatccatcccaatcagttgtatgcaattctgcactaattgcgcatggtctctgagac 363
Query: 301 tctgggaggggccaaaggatgtagatagggaggatgagaagagaagccctctcatcctgc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tctgggaggggccaaaggatgtagatagggaggatgagaagagaagccctctcatcctgc 303
Query: 361 catggagtagccatcatccctgctaggggcaaaccttccagtgtggctgcttgtaagatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 302 catggagtagccatcatccctgctaggggcaaaccttccagtgtggctgcttgtaaggtc 243
Query: 421 acctaagttccataagccctcacacagttctgaatgtgagcc 462
||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 242 acctaagctccataacccctcacacagttctgaatgtgagcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no402_f05.g1 MSMg01no402_f05.g1 CHROMAT_FILE:
MSMg01no402_f05.g1 PHD_FILE: MSMg01no402_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:11 2005
(545 letters)
>mm_chr18_39074359_39075302
Length = 944
Score = 891 bits (461), Expect = 0.0
Identities = 528/557 (94%), Gaps = 14/557 (2%)
Strand = Plus / Plus
Query: 1 ctgtcaccaaattccacctgtctcttaggatgcctccccagttagaagcacagacctgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 ctgtcaccaaattccacctgtctcttaggatgcctccccagttagaagcgcagacctatt 260
Query: 61 ggacagcctgactccactgccctttggtagctgtgggccgacaagtaagtggccccctcc 120
|||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct: 261 ggacagtctgactccactgctctttggtagctgtgggccggcaagtaagtgg-cccctct 319
Query: 121 actgagcctgagtcctgcatccatgccagcctctgattctctgaggtgttggcagactta 180
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 320 actgagcttgagtcctgcatccgtgccagcctctgattctctgaggtgttggcagactta 379
Query: 181 aagttgagcccagtgccgggatccagaaaggaccagaacactggtgactaggacaatgac 240
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aagctgagcccagtgccaggatccagaaaggaccagaacactggtgactaggacaatgac 439
Query: 241 agttctgtctccagatcttcacaaatgcaaaccaagccccaagcctaacaagcataagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agttctgtctccagatcttcacaaatgcaaaccaagccccaagcctaacaagcataagta 499
Query: 301 ccagggtggtgcttggggcaccacagcctcctcagctctcagtaacacagaaagccaggc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ccagggtggtgcttggggcaccacagcctcctcagctctcagtaacacagaaagccaggc 559
Query: 361 tgtagacttaggccgtcactcatttgatcctgcccttattaggt-----------caccc 409
||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 560 tgtagacctaggccgtcactcatttgatcctggccttattaggttagcactttatcaccc 619
Query: 410 tttttacaaatgagaaaactgacgggcaagtcaccacactaattagtaagagcgtcagaa 469
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 620 tttttacaaatgagaaaactgacgggcaagtcaccacactaattagtaagagcatcagaa 679
Query: 470 tgtgggcctcggctgcctcactgcagaattc-gtgcgttttgtcgccgggtcactttgtg 528
||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||
Sbjct: 680 tgtgggcctcggctgcctcactgcagaat-ctgtgcgttttgtcgctgggtcactttgtg 738
Query: 529 tttcctgagcacatgca 545
|||| ||||||||||||
Sbjct: 739 tttcttgagcacatgca 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 944
Length adjustment: 10
Effective length of query: 535
Effective length of database: 934
Effective search space: 499690
Effective search space used: 499690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
