BAC Information

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BAC

Clone NameMSMg01-402F14
Chromosome18 (Build37)
Map Location 80,724,667 - 80,724,867
singlet/doubletsinglet
Overlap geneLOC100039336
Upstream geneLOC100039250, LOC383311, LOC433204, LOC545267, LOC100040632, LOC620963, LOC100040604, LOC620692, LOC100040593, LOC639825, Pard6g, Zfp508, LOC665009, LOC100039311, 1110032A13Rik, Txnl4, 1810005K13Rik, Pqlc1, Kcng2, D330025C20Rik, Ctdp1, LOC669389
Downstream geneA430076E10Rik, LOC100039348, Nfatc1, Atp9b, Sall3, LOC665124
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402F14.T7 (MSMg01no402_f14.b1)MSMg01-402F14.TJ (MSMg01no402_f14.g1)
ACCAG501517AG501518
length807788
length of high quality
(start - end)
249 (66 - 314)201 (78 - 278)
definitionCHROMAT_FILE: MSMg01no402_f14.b1 PHD_FILE: MSMg01no402_f14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:12 2005CHROMAT_FILE: MSMg01no402_f14.g1 PHD_FILE: MSMg01no402_f14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:16:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXTATACCAGAGGATCCGCGGA
ATTCCTGAATCCCAGTCTAGTCAAACTGAGGAGCTTCTGATTCAGTGAGA
GGCCCTGGCTCAGAGAGAGAGAGACAGACAGACAGACAGACAGACAGACA
GGGGAGAGACGGACAGACAGACAGACAGACAGATGGAGAGATGGACAGAC
AGACAGAGAGACAGACAGGGGAGAGACGGACAGACAGACAGACAGACAGG
GGAGAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGAGAGAGAG
AGAGAGAGAGAGTCTGTTTTTGTNATGAGCTTTTGAAACCTTGACACCAG
CTCCCACATGTTCTAGTCCTTCTCTTCCCGCTCCACTTTACTGGCGAACA
TGCTTCCATACTATTTGTTTCTTTGTGGGTCTTTCCTTTTTCTCCCCTCC
CCCATATGTCTCACCTCTCGTCCTCGTTTTCCTTTTTCTGGTTCTCTACT
GCTCCTCTCCTGCCTTCTTTTTTTTCTCCTTCCTCTCTATCTCCCCGTTC
CCCTTTCTACCACTTCCTCCAACTATTTGTCCTCGCTTTTTTCCCCCCCC
CCTTTCTTCCCTATCTCATTCCGTGCTTATTGTCAACTTTGTGCCTTTAC
CCTTTTCCTCCTTTTTTCCCCTCTTTTTTCTTTCTATTGTCCCTTATTTT
TTTCCCATTTTCCCCCCCGCTTCCTCCTCCCCCCTTTTTCTCCTCCTCTC
TCTTTTCCTTTCTGCCTTTACCCCCTTCTCCTCTCCCCCCCCTTTCCTCT
CTAATTT
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTACCAGCAGAAATCAGAGGCTGCCAAGGTCTGTCCTG
GTGTCACGTCCACTGGAGCCAGACGATGCAGCCCCATCTTGCTGGCCTCT
AGAAACGGCATGAGGTAGGTAAGGCAAACCAGGAGTGCATTGCTAAGTCA
CTCCATGGAATCATCTGCCCAAGTCTTGGTTCCAGGCCCACCTTAGGGAT
TAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTCCCCTTTTTTTCCCCC
CCCCTTTNCCCCCTTTTCCTAGTTTTCCGACAAGATACACACCCTAACCT
ACCCCCTTTTTTTTCCCACCCCCTTTCATTTTACTTTTTCTCCCCCCCCT
TCCCTCCCCCTTATTCTCTCTTTTTTTTTCTTTTTCCTTTTCCCCCCCTC
CCTTTTTTTTCCTCTCCCCCCATTCCCTCTTTTATTTTCTTCCCTCTTTT
TAGCCCCCCCCATTTTTTATCTTTTTTTCTTTTCCTTATCACTTTCATTA
TTTAAAGTTTTCTTCCCTCTTTTATACAAACCTTTTCACTATGTTTGACT
CCCTATTTTCCTCTTCTCAACCACTCATTTTTATTCCCCTCTCTCTTTCC
GCTCCCTCCCTTCTTCTTTCTTTTTATTCTCCCCCCCTATCTCCCCTTCC
TTCATCCTCCCTCCTTTAATTCCTACCTATCCTTTCTCATTACGACAATA
TTTTCTAACTTTCTTTCTCACCATTTCTCTTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_f14.g1 MSMg01no402_f14.g1 CHROMAT_FILE:
MSMg01no402_f14.g1 PHD_FILE: MSMg01no402_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:16:12 2005
         (201 letters)



>mm_chr18_80724491_80725091
          Length = 601

 Score =  381 bits (197), Expect = e-110
 Identities = 200/201 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaggctgccaaggtctgtcctggtgtcacgtccactggagccagacgatgcagccccat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 377 agaggctgccaaggtctgtcctggtgtcacgtccactggagccagaggatgcagccccat 318

                                                                       
Query: 61  cttgctggcctctagaaacggcatgaggtaggtaaggcaaaccaggagtgcattgctaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cttgctggcctctagaaacggcatgaggtaggtaaggcaaaccaggagtgcattgctaag 258

                                                                       
Query: 121 tcactccatggaatcatctgcccaagtcttggttccaggcccaccttagggattagggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tcactccatggaatcatctgcccaagtcttggttccaggcccaccttagggattagggtg 198

                                
Query: 181 tgtgtgtgtgtgtgtgtgtgt 201
           |||||||||||||||||||||
Sbjct: 197 tgtgtgtgtgtgtgtgtgtgt 177


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)