BAC Information

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BAC

Clone NameMSMg01-402O19
Chromosome18 (Build37)
Map Location 54,446,395 - 54,446,859
singlet/doubletsinglet
Overlap genenone
Upstream geneSnx24, Ppic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
Downstream geneEG545257, LOC100042489, Zfp608, LOC100043089
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402O19.T7 (MSMg01no402_o19.b1)MSMg01-402O19.TJ (MSMg01no402_o19.g1)
ACCAG501957AG501958
length773752
length of high quality
(start - end)
241 (79 - 319)464 (79 - 542)
definitionCHROMAT_FILE: MSMg01no402_o19.b1 PHD_FILE: MSMg01no402_o19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005CHROMAT_FILE: MSMg01no402_o19.g1 PHD_FILE: MSMg01no402_o19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAACTTTTCCGAAAACATGGTGAACCAAGGGGGGGGGGATT
ATCTCAGAGATCAAGGGGGCTTCCTGTAATTGCAGAAAATCTGAATTCAG
TCCCCAGAACTCCCATTGTTTAAGTGGCTCACAAACTGCCTGCAACTTTA
GCTCAAGAGGCTCAGATGCCCTCTTCTGGCCTCCAGAGGTACAAGAACAC
ACATGGTGTACACACAGGGGCAGACATATATACATAGACATACTAAGAAT
TGAAAATGAATACATTTTACCTGCTTTAAATATTAGGGAGCAAGAGCTTG
AGCAATGACTTAGTGGTTAAAAACACCTATTATTCCTGCAGCAGACTTTG
GTTTCCTTCCTAGCACCCATGTGGTGACTTACAACCACCTGTAACCCCAC
TTTCAGAATGATTGAATACCCTCTTCTGGTCTCCGAGGACCCCAGCCACA
AATCGTCTACTCATAAATTACCCCACACCATACTTTTCCACCACAACACA
TCTCACTACTCGACCCGCCCTCATATCACTTACTACGCTTTCACGTTCCC
CCCCCCTCTCTTTCCCTTGTCTCCTTTCTCACCCCCCCTTTTCCCCTCTA
CTCCCCTTTTTTCACTCCCCCGTGGTACCCCTCACCCCCTTTCTCCTCCA
TCTTTTTTATTCCCCACCCTCCCCTTTAATACATTAACCCTTTACTCTAT
TCACTTCCCCCACTTTCTATTTA
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGTTGTGCCTTTTGAGATCTT
CCCCTAGCTTTTGAAGTGATTCAATCCAGGTTTTTACCAGGATAGAATCA
TTGATGTATTAACAGCATCCTCTCTAGGGAATAAGCAAGTGCCTCTTTAA
CAGCAGGGAGGAGGTCGTCTACTGCTTGGTGATTTTGTAACACAACCTGG
GCCAGTGAGGTGAACTGTCGTTGGCAGGAGGCCAGGGATTCTGCTGAGTC
CCCAATAGCTGCTTGAAGTTTCTCGGACAGAGTTTGTATTTTCAGTGACC
AAATACCCCAGGGTGCTTGATCCTAGAACTGATACTATGATAGATGCTGT
AATGGAGATGCCAGCCATGACTAGAAGGAAATCAGCCTGATCCCCTTTGG
GTGCAGGGAGAGGATGGCAGGAGGGAACCATAATGATCTCAGCCTGTCCA
TATAAGGTTACTTGAGGAACCAAGATCACTTGAAGGCATAGAGATGGTGT
GGGCAGGTGGCATATGATCTTGTCAAGAGGTTTTTGAACAAAGTCCCCTT
TGCTTCAAGGAAGACACATACACTTACACATCACACCCCCACTCTCTCTT
CTTTTTCTCTCCTACATTATACTCCCTACACCCTTACTATATCCTTTATT
TTTCCCACATAATTTAACCACTCGCATTATCACACTCATTACTTTACTTG
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_o19.g1 MSMg01no402_o19.g1 CHROMAT_FILE:
MSMg01no402_o19.g1 PHD_FILE: MSMg01no402_o19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:00 2005
         (464 letters)



>mm_chr18_54446195_54447059
          Length = 865

 Score =  797 bits (412), Expect = 0.0
 Identities = 452/466 (96%), Gaps = 3/466 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggttgtgccttttgagatcttcccctagcttttgaagtgattcaatccaggtttttacc 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 201 tggttgtgccttttgagatcttcccctagcttttgaagtgactcaatccaggtttttacc 260

                                                                       
Query: 61  aggatagaatcattgatgtattaacagcatcctctctagggaataagcaagtgcctcttt 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 aggatagaatcattgatgtactaacagcatcctctctagggaataagcaaatgcctcttt 320

                                                                       
Query: 121 aacagcagggaggaggtcgtctactgcttggtgattttgtaacacaacctgggccagtga 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagcagggaggaggtcgtctagtgcttggtgattttgtaacacaacctgggccagtga 380

                                                                       
Query: 181 ggtgaactgtcgttggcaggaggccagggattctgctgagtccccaatagctgcttgaag 240
           ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 ggtgaactgtcgttggcgggaggccagggattctgctgagtccccaagagctgcttgaag 440

                                                                       
Query: 241 tttctcggacagagtttgtattttcagtgaccaaataccccagggtgcttgatcctagaa 300
           ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 441 tttctcggacagagtttgtattt-cagtgaccaaatgccccagggtgcttgatcctagaa 499

                                                                       
Query: 301 ctgatactatgatagatgctgtaatggagatgccagccatgactagaaggaaatcagcct 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 500 ctaatactatgatagatgctgtaatggagatgccagccatgactagaaggaaaacagcct 559

                                                                       
Query: 361 gatcccctttgggtgcagggagag--gatggcaggagggaaccataatgatctcagcctg 418
           ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||
Sbjct: 560 gatcccctttgggtgcagggagagaggatggcaggagggaaccatagtgatctcagcctg 619

                                                         
Query: 419 tccatataaggttacttgaggaaccaagatcacttgaaggcataga 464
           |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 620 tccatataaggttagttgaggaaccaagatcacttgaaggcataga 665


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)