BAC Information

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BAC

Clone NameMSMg01-402P10
Chromosome18 (Build37)
Map Location 51,838,997 - 51,839,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox, Zfp474, 1700034E13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P10.T7 (MSMg01no402_p10.b1)MSMg01-402P10.TJ (MSMg01no402_p10.g1)
ACCAG501987AG501988
length761708
length of high quality
(start - end)
373 (49 - 421)525 (87 - 611)
definitionCHROMAT_FILE: MSMg01no402_p10.b1 PHD_FILE: MSMg01no402_p10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005CHROMAT_FILE: MSMg01no402_p10.g1 PHD_FILE: MSMg01no402_p10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCACTCTTGCACTTGCGCATAAGGCTTGTTTACTAGTTAGGCAC
AGTGGAAGCCAGCGCCATCTTATAATGGCAATTGCTCATGGCACGGCTCT
CCACATCCTATCTCAACTTAATAAAGACAATCCCCACCTGACAAGTTCAC
AGACAAACTTGATCTCGCGTTGCTGAGACACTCTTTCCAAGCAATTATAT
AGTGCCAAGTCAATTGAAACAATCACATTAACTGTTTGATGTGGTCAGGA
CACCTTATTTTTTTTTATTTATTTTATTAGGTATTTTCTTCATTTATTTT
ATTAACACACTAAGATAATTACTTTATAAGTGATGCGTATAGATTAGATT
TTATAAATATATGGTTGATTTTAAAGTAATTTTATATAATTACAAAATAA
AGTTGTGTATTGTAAAATCTGAGAATTGAAACCCTGCAGCTTTCACTGAT
GTTTCTGATAAAGACTCTATATTTGCCTAAGGTACTGTGGTCGCTCCCTC
TGATCTTGTATTATTCCCGACCTTGCATGCTTTCACTTTTTGAATTCCCT
TGCCGGTTTTGATCCATATATCCGTGTTTCCACTTTACCTCTGGCGTGCT
TTATTTTATTATTAATCTGACCCCCCTCTACCATTACCTGATTCTGTCTT
TATTTTGCTTAACTAACTCTAACCCTCATCGCCTTTACCTCCACAGCATC
TAACTATAAAG
NTTTTCCTCCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAGGAAAC
AGACTGGGAGGAAGAAGCAGCTCATTACCAGCCAGCTAATCGGTCAAGAA
AAAAGCCAAAAGCGGCTGGCGAAAGCCAGCGTACTGTTCAGCCTCCGGGC
AGTCGGTTTCAAGGTCCGCCCTATGCGGAGCCCCCGCCCTGCGTAGTGCG
TCAGCAATGCGCAGAGAGACAATGCGCAGAGAGGCAGTGCGCAGAGAGGC
AGTGCGCAGAGAGGCAGTGCGCATACTCATTCATTCCCAGAGAGGAACAA
AGGAAAATACAACAGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCG
TGTCCACGCTCCGGTAGAATACGTGCAGATTAAAGAACTCGCCGAGTCGG
TCCGTAAATACGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACAGG
CTTGCTGGCATGGCACTAACCCCTGCCGACTGGCAAACGATTGTAAAAGC
CGCTCTCCCTAGTATGGGCAAATATATGGAATGGAGAGCGCTTTGGCACG
AGGCTGCACAAGCGCAGGCCCTGATCAACGCAGCTGTTTTGACTCCCGAG
CAGAGAGATTGGACTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGC
TGATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p10.b1 MSMg01no402_p10.b1 CHROMAT_FILE:
MSMg01no402_p10.b1 PHD_FILE: MSMg01no402_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:04 2005
         (373 letters)



>mm_chr18_51838793_51839565
          Length = 773

 Score =  629 bits (325), Expect = 0.0
 Identities = 358/369 (97%), Gaps = 1/369 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactcttgcacttgcgcataaggcttgtttactagttaggcacagtggaagccag 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 205 gaattcactcttgcacttgcgcataaggctggtttactagttaggcacagtggaagccag 264

                                                                       
Query: 65  cgccatcttataatggcaattgctcatggcacggctctccacatcctatctcaacttaat 124
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 265 tgccatcttataatggcaattgctcacggcacggctctccacatcctatctcaacttaat 324

                                                                       
Query: 125 aaagacaatccccacctgacaagttcacagacaaacttgatctcgcgttgctgagacact 184
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 325 aaagacaatccccacctgacaagttcatagacaaacttgatcttgcgttgctgagacact 384

                                                                       
Query: 185 ctttccaagcaattatatagtgccaagtcaattgaaacaatcacattaactgtttgatgt 244
           |||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 385 ctttccaagcaagtatatagtgccaagtcaattgaaacaattgcattaactgtttgatgt 444

                                                                       
Query: 245 ggtcaggacaccttatttttttttatttattttattaggtattttcttcatttattttat 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggtcaggacaccttatttttttt-atttattttattaggtattttcttcatttattttat 503

                                                                       
Query: 305 taacacactaagataattactttataagtgatgcgtatagattagattttataaatatat 364
           ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 504 taacacactaagataattactttataaatgatgtgtatagattagattttataaatatat 563

                    
Query: 365 ggttgattt 373
           |||||||||
Sbjct: 564 ggttgattt 572


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)