BAC Information

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BAC

Clone NameMSMg01-402P11
Chromosome18 (Build37)
Map Location 38,673,049 - 38,673,478
singlet/doubletsinglet
Overlap genenone
Upstream genePcdhb21, Pcdhb22, Slc25a2, Taf7, EG666693, Pcdhg@, Pcdhga1, Pcdhga2, Pcdhga3, Pcdhgb1, Pcdhga4, Pcdhgb2, Pcdhga5, Pcdhga6, Pcdhga7, Pcdhgb4, Pcdhga8, Pcdhgb5, Pcdhga9, Pcdhgb6, Pcdhga10, Pcdhgb7, Pcdhga11, Pcdhgb8, Pcdhga12, Pcdhgc3, Pcdhgc4, Pcdhgc5, Diap1, Hdac3, 4631403P03Rik, Fchsd1, Centd3, Pcdh1, LOC100042583, 1700086O06Rik, 0610009O20Rik, Pcdh12, Rnf14, Gnpda1, LOC240219, LOC100041839, Ndfip1
Downstream geneSpry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26, Nr3c1
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-402P11.T7 (MSMg01no402_p11.b1)MSMg01-402P11.TJ (MSMg01no402_p11.g1)
ACCAG501989AG501990
length738739
length of high quality
(start - end)
266 (56 - 321)431 (73 - 503)
definitionCHROMAT_FILE: MSMg01no402_p11.b1 PHD_FILE: MSMg01no402_p11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005CHROMAT_FILE: MSMg01no402_p11.g1 PHD_FILE: MSMg01no402_p11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGAGAACCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCACACGCCTATAATCTTAGCACCTGGAAAGCAGTGT
CATGGTGAGTTCAAGGCTGTTAAGACTTTGTACTGCTTTTGTATCAGAGC
TAAGTTCAGCTCCTGGCACCTAAGTCGGGCAGCTTCCGACTACAAGGAAC
TTCAGCTCCAGGGGATCGGATGTGCTCTTCTGGACTCTGAAGGTCCCTGA
ATTCACGCACGCATGCACACGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGACTTTTTATTTTGAAGAATTTGATTACCCCAGACACTTGTTAC
AGTGACACAGAGCTAAAGCATACAGCTTGCAAATCTTAATGTCCAACGTT
TCAGGGGTTGTAGGGTCTATTAAAATCAGTATGGGGGTGGGGGGGTTCCA
AACTACTGCTGTTTTGGGGGCCATTAGCTCCCCCTCATTCCCCCGCTTTT
TAAACAAGTTCCCTATAGGAAAAATATTTTCGAAGCCCCCCCCCTCTTTA
AAAACGTTAAACTCCGGTGTTATACCCTCTCTACACGAAAGAGTTTTTGT
CCTCCGCGGCAACCAACCCTTTTTTTTCTCCCGCCCCATTTCTCTTCGGG
GGGAAAATTCTCCTCCTTTTTTTTGTTTTCCTCCTCGCCTTTGATATTTT
TTTTTTTTTGTATGCTTCTCCGTTTTTCTCCCCCCATN
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAACAAGTTAATCTTTTGCTTCTTTGGT
TTTTGTTTTTGTTTTTGCAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTC
CTGGAACTCACTCTGTAGACCAGGCTGGACTCGAACTCAGAAATCTGCCT
GCCTCTTCTTCCCAAGTGCCGGGATTAAAGGCATGTGCCACCACTGCCCG
GCAGAAACCCTGTCTTGAAAAACCAAAAACTAAATAAACGAATGAATGAA
GCAAAATTCCAAGCACAGTTTCCATTGGATGTTTAGTTTCACATCTTAAA
CTGGGGGGCCATCTGTCCTACTAGTAAAGAAACGCTAGGTGAACCTATGA
CAGAGCCCTGAAATACCTGCTTCCTTGCTTATTCTGGGACGATGAANACT
GAGGGCCCTCACCCAGAGGGAAAGCAGTGCGGACGTGGGAAGAGACTAAC
AGAGAAGGGCATTTTCTTTCCTTTCTTTTTAATGTTTACTTTCAATTGTT
ATTAAATATAGATTAGCTCACCGGCCTCCTTGGCCCCCTTTCTCTGGTTT
CCATCACTTTCCCGAAAGGGAACCTAAGGGGGGGTTTATTCCCCCCAAAG
CTTGTCCCTTGGAAGCCCGTTCCCCTTGGGGATACCAAATGGGAACTGAA
TTTTTTTAAAAAGGGGGTTTTCTTAACCCTTCCTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no402_p11.g1 MSMg01no402_p11.g1 CHROMAT_FILE:
MSMg01no402_p11.g1 PHD_FILE: MSMg01no402_p11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:04 2005
         (431 letters)



>mm_chr18_38672669_38673499
          Length = 831

 Score =  810 bits (419), Expect = 0.0
 Identities = 427/430 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   aacaagttaatcttttgcttctttggtttttgtttttgtttttgcagacagggtttctct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 aacaagttaatcttttgcttctttggtttttgtttttgtttttgcagacagggtttctct 751

                                                                       
Query: 62  gtgtagccctggctgtcctggaactcactctgtagaccaggctggactcgaactcagaaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 gtgtagccctggctgtcctggaactcactctgtagaccaggctggactcgaactcagaaa 691

                                                                       
Query: 122 tctgcctgcctcttcttcccaagtgccgggattaaaggcatgtgccaccactgcccggca 181
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 690 tctgcctgcctcttcttcccaagtgctgggattaaaggcatgtgccaccactgccgggca 631

                                                                       
Query: 182 gaaaccctgtcttgaaaaaccaaaaactaaataaacgaatgaatgaagcaaaattccaag 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gaaaccctgtcttgaaaaaccaaaaactaaataaacgaatgaatgaagcaaaattccaag 571

                                                                       
Query: 242 cacagtttccattggatgtttagtttcacatcttaaactggggggccatctgtcctacta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 cacagtttccattggatgtttagtttcacatcttaaactggggggccatctgtcctacta 511

                                                                       
Query: 302 gtaaagaaacgctaggtgaacctatgacagagccctgaaatacctgcttccttgcttatt 361
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gtaaagaaacgctaggtgaacctatgacagagccctgaaatacctgcttccttgcttatt 451

                                                                       
Query: 362 ctgggacgatgaanactgagggccctcacccagagggaaagcagtgcggacgtgggaaga 421
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgggacgatgaaaactgagggccctcacccagagggaaagcagtgcggacgtgggaaga 391

                     
Query: 422 gactaacaga 431
           ||||||||||
Sbjct: 390 gactaacaga 381


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)