BAC Information

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BAC

Clone NameMSMg01-403G08
Chromosome18 (Build37)
Map Location 51,113,949 - 51,114,281
singlet/doubletsinglet
Overlap genenone
Upstream geneDmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373
Downstream geneLOC100042385, Prr16, EG240289
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403G08.T7 (MSMg01no403_g08.b1)MSMg01-403G08.TJ (MSMg01no403_g08.g1)
ACCAG502316AG502317
length779760
length of high quality
(start - end)
426 (73 - 498)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no403_g08.b1 PHD_FILE: MSMg01no403_g08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:40 2005CHROMAT_FILE: MSMg01no403_g08.g1 PHD_FILE: MSMg01no403_g08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:17:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGATTTACGCACATTTGACAGCCAATTTTAAGTACTGGGTATTTGT
CATTAAAGGAATAACACCAAACATTAATCCTACTGTGATGAAAATGTAAA
GGTTTTATGTGGTGCTGTGAACTAGAGGCGAACCCTAGAAATCAGACCTA
TTGACCTCTGATTTATTGTGCATAACTGAATAAAACTCCCACTTTCCCTC
ACCATCAGAAGAACAATGGTCATTTTACTCACTGTTTCTATAAATACAAG
TGTTTCAGATAGCTCCTATCAAGAGACTCATCTAGTATTTGTCTTATCGC
TGTCTTCTCTCAGTTTTCTCACTGTTCTAACAGATTGTTAAAGTTCTGGA
AATATAAAGTAGACATAGCCAATCTATCATAACTGTGAAACTCATCATGG
CAGATGACAGATACATTTTGCTTCTTTTTTTTGCCTTGCTTTGTTTTGCT
TTGTTTTGTTTTGGTTTTAGATAACTTGCTTGCAAGCATGCATCTGCATA
TTTTATTAAAAATATTACCTAAAGCTGGGTTTTTCACTTGCTTCCTGTTA
CAGTACGCCAATGAATTTGCCCCGCCCATAAGTTTTTAATAATTTTCGCG
CCCCGCTCTTACACCCGTTTCCATATTTTCCGTCATACTCCCCCCTATTT
CTATCTTTTTTCCTCTCCGCCTTCTTTTTTTTCCCTCCCACTCCTCGTTC
TTTTTTTCCCCACTTTAATCCCTTACTCC
CATGATAGTGGGAGGCCTGGGGGNCGCCTGTTTCAAAAATTTAGGTGAAC
TATAGAATTATCAGAGACAATCTCACCTGAGGAACGCGAATGTCAGAGAA
GCACCTGAAAAAATGTTCACCATCCTTAATCATCAGGGAAATGCAAATCA
AAACAACCCTGAGATTCCAACTCACACCAGTCAGAATGGCTAAGATCAAA
AATTCAGGTGACAGCAGATGCTGGCGAGGATGAGGAGAAAGAGGAACACT
CTTCCATTTTTGGTGGGATTGCAACCTTGTAAAACCACTCTGGAAATCAG
TCTGGTGGTTCCTCTGAATACTGGACATAGCACTATCAGAGGACCCAGCT
ATACCACTCCTGGGCATATACCCAGAAGATGCTCCAACATGTAATAAAGA
CACATGTTCCACTATGTTCATAGCAGCCTTATTTATAACAGTCAGAAGCT
GGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACCGAAAATGTGG
CACATTTACACCATGGCGTACCACTTATCTATTACAACTAATGACCTTAT
GAATTTCCTAAACCAACGGATGCACCTGCCCGCCATCCTCCTGACTGAGG
TATTCCTATCCCCACTTCTCCCGGTCTCACATGTCCTTCTCCGATACCGT
TTTATTTTTCCCTTAAACCTCCGCTATACCTCCCGCCCATTAATTTTACT
ATGCCCCTTCTTTTCCTACCCCCCCTCACTTCCTAACCTTTGGTTCGTAT
ACCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_g08.b1 MSMg01no403_g08.b1 CHROMAT_FILE:
MSMg01no403_g08.b1 PHD_FILE: MSMg01no403_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:17:40 2005
         (426 letters)



>mm_chr18_51113456_51114281
          Length = 826

 Score =  605 bits (313), Expect = e-177
 Identities = 328/333 (98%)
 Strand = Plus / Minus

                                                                       
Query: 94  tgtgaactagaggcgaaccctagaaatcagacctattgacctctgatttattgtgcataa 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tgtgaactagaggcgaaccctagaaatcagacctattgacctctgatttattgtgcataa 767

                                                                       
Query: 154 ctgaataaaactcccactttccctcaccatcagaagaacaatggtcattttactcactgt 213
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ctgaataaaactctcactttccctcaccatcagaagaacaatggtcattttactcactgt 707

                                                                       
Query: 214 ttctataaatacaagtgtttcagatagctcctatcaagagactcatctagtatttgtctt 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ttctataaatacaagtgtttcagatagctcctatcaagagactcatctagtatttgtctt 647

                                                                       
Query: 274 atcgctgtcttctctcagttttctcactgttctaacagattgttaaagttctggaaatat 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atcgctgtcttctctcagttttctcactgttctaacagattgttaaagttctggaaatat 587

                                                                       
Query: 334 aaagtagacatagccaatctatcataactgtgaaactcatcatggcagatgacagataca 393
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 aaagtagacatagccaatctatcataactgtgaaactcatcatggcagatgacagataca 527

                                            
Query: 394 ttttgcttcttttttttgccttgctttgttttg 426
           ||||| ||||||||||||  ||| |||||||||
Sbjct: 526 ttttgtttcttttttttgttttgttttgttttg 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)