BAC Information

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BAC

Clone NameMSMg01-403P22
Chromosome18 (Build37)
Map Location 69,792,237 - 69,792,567
singlet/doubletsinglet
Overlap geneTcf4
Upstream geneLOC100043380, EG225681
Downstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-403P22.T7 (MSMg01no403_p22.b1)MSMg01-403P22.TJ (MSMg01no403_p22.g1)
ACCAG502773AG502774
length827859
length of high quality
(start - end)
392 (39 - 430)205 (68 - 272)
definitionCHROMAT_FILE: MSMg01no403_p22.b1 PHD_FILE: MSMg01no403_p22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:29 2005CHROMAT_FILE: MSMg01no403_p22.g1 PHD_FILE: MSMg01no403_p22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:18:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
GCTTCGTTCCCGATGCTGTCCTGCTTCAAGGAAACACAGACAAGCAAACA
CAAGGGCTATTTTTAAAAGGAGCTGCTTCCCCCAAGCCCCGTGAGGGCCA
GTAAACGAATGTTAAGTAAATTAGGGTTTTGGCACACTTTTAAAGTTTAT
TGTACACAGAAATATAATAAGCACTTAAAAAGAGACAGCCCCCTCTTCCT
GTGTACATATTGATTGTTGGTGGTCCTGTGCTGATTCAGGCAATTAATGG
CCTTTTTCCTGCATCTCTGCTTACACTGTGTGGACTAATAGTCCATGATA
TATATGTACTTATCACTCATTCCTGATGATGATGATGATGATGATGATTC
TTCTTCTTCTTCTTCCTCTTCTTCTTCTTCCTCTTCTTCCTCTTCTTCTT
CCTCTTCTTCTTCTTTCCTTTTTCCTCTTTCCTCTCTCTCCCCCCTCTAT
CTTTTCTCTCCCCTCTCCTTTTCCCACTCCCTCTCTTTTTCTCTCCCTCT
CCTTCCCCCCCTTTTTTCTCCTTTCTATCCCCTCCCCTTTACCCTTCTTC
TGCCTTTTTCTCCCCTCCCCTTTCTTTTTTTTCCCTCCTCCTTCCCCCTT
TTTTTTCCCTTTCCTTTTTTTTCCCTTCTCCCTTCTTCTTTCCCTTTTTC
CCTTTTCCTCTCCCCCTTCTCCCCCTTTTTTTCTCCCTCACCTCTTTTTT
CTCCCTCTTTTTTTTCCTTTTTTCTTTCCCTCCTTCTCCTCCTTTCTCCT
TCCTCTCCCCTCTCTACTACCTCTTCT
TGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCGTTGCATGGCTGTGCCTTGCCTAGATGACT
TCTGGCAGACCTTCTCCCTACCTCCCAACTCTTACATCCTTTCTGCTCCT
ATTCCCCAATAGTTCCTGAGTCTTAGCAGGCATGGTATAAATGTCTTATT
TAGGGCTGAACATGCCCACATCTTAATGACCCTTTTTTGTTGTTGTTGTT
GTTCTAAATAATAATGTCCTCTGCGGCTCCGTAGTCCTCTTTCCTCTGCT
TGTGTCCTCCCTAGCTCTTTTGGTTAAGGTCCCATCTTTTCTGTGTTCAC
TGTCCAGACACGGATTTGATTCAGGCCTATCACACGACAGTTTGTATTTC
CTGGTCCCCACCCGCCTGTTAGCCTTCTCTTTTCCCCCCCTTCTCTTTCA
TCCCGGTCCTTTCTTTTGTCCTATCCCCCCCTTTTCTTTCTCTTTTTTCC
CCTCCTTTTTTCTTCTTTTTTTACCCCCCTTTCCTTCCCCTCCTCTCTCT
TCCTTTTCATTTTCTCACCCCCATATTCCCCCCCCACCTTTTCTCTTCCG
CCTTCCCTTTTCCCCCTTTTTCCTTTTCCTCCCCCCTTCCTACCCTTCTC
CCCCACCTTTTTTTTTTATCTATCACTCGCTTCCCTTCTCCTCCCACCCC
TTTTTCACTCCCATCTCTTTCTTTTCTTTTCCTCTACCCCCTATCTTTAC
CCCTTTCTCCTCCCGCTTCATTATACCCCCCTCTCCCTCGTTTCCCCCCC
TCCCCTTCCCCCCTCTTTTTTTTTCCCTCTTTTCTCCCTTTATCCCTTCT
TTTCCTCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no403_p22.b1 MSMg01no403_p22.b1 CHROMAT_FILE:
MSMg01no403_p22.b1 PHD_FILE: MSMg01no403_p22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:18:29 2005
         (392 letters)



>mm_chr18_69792033_69792823
          Length = 791

 Score =  584 bits (302), Expect = e-171
 Identities = 325/334 (97%), Gaps = 5/334 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgcttcg-t-tcccgatgctgtcctgcttcaaggaaacacagacaagcaaaca 62
           |||||||||||||| | |   |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgcttcgctgt---gatgctgtcctgcttcaaggaaacacagacaagcaaaca 261

                                                                       
Query: 63  caagggctatttttaaaaggagctgcttcccccaagccccgtgagggccagtaaacgaat 122
           |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 262 caagggctatttttaaaaggagctgcttcccccaagccccatgaggaccagtaaacgaat 321

                                                                       
Query: 123 gttaagtaaattagggttttggcacacttttaaagtttattgtacacagaaatataataa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gttaagtaaattagggttttggcacacttttaaagtttattgtacacagaaatataataa 381

                                                                       
Query: 183 gcacttaaaaagagacagccccctcttcctgtgtacatattgattgttggtggtcctgtg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gcacttaaaaagagacagccccctcttcctgtgtacatattgattgttggtggtcctgtg 441

                                                                       
Query: 243 ctgattcaggcaattaatggcctttttcctgcatctctgcttacactgtgtggactaata 302
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 442 ctgattcaggcaattaatggcctttttcctgcatctctgcagacactgtgtggactaata 501

                                             
Query: 303 gtccatgatatatatgtacttatcactcattcct 336
           ||||||||||||||||||||||||||||||||||
Sbjct: 502 gtccatgatatatatgtacttatcactcattcct 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 791
Length adjustment: 9
Effective length of query: 383
Effective length of database: 782
Effective search space:   299506
Effective search space used:   299506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)