BAC Information

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BAC

Clone NameMSMg01-404J18
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404J18.T7 (MSMg01no404_j18.b1)MSMg01-404J18.TJ (MSMg01no404_j18.g1)
ACCAG503236AG503237
length771748
length of high quality
(start - end)
203 (60 - 262)340 (67 - 406)
definitionCHROMAT_FILE: MSMg01no404_j18.b1 PHD_FILE: MSMg01no404_j18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:21 2005CHROMAT_FILE: MSMg01no404_j18.g1 PHD_FILE: MSMg01no404_j18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:21 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAG
GGATTCCATCACTCAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCCTCT
GGATAGACAAGGCTCAACAGTTCAGAGAACCAGGCCATCGCAAATAGTTC
ACAGACCTGCAAGGAAGACATGCAGATCCCTGCCCCCCACCCTACCCCTC
CCCCAGCCCCACCCAAACATAGGGAGAAAAGGCAGTGTGGGNGGAGGGGG
AGGTGCTGTNANANNTNTTTTTTTTTTTTTTTTTNTTNTTTTTTTTTTNN
NTNNTTNTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNANNNNNNNNNT
NTTTTTTTTCTTTTNTTATTTTTTTTNTTTTTTATTTTTTTTTTTTTTTT
TTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTNNTCTTTTTTTTTTTTT
TTTTTTTTTTTTTTNTTTTTTTTTTTTTTTATATTTTTTTTTTTATNATA
TTTTATATTTTATACTCCCCCCCTTTTTTTTTTCTATTTTTCCCTCTTCT
TTTTTTATTTTTTTCTCCTTTTTATTTTCTTTTTTTCTTCCCCCTCTTTA
TATTTATAATTCTTTATTTTTCTCCCTTTTTTTTTTATTCCCTCCTTTTT
TATTCTTTTTCCCCCCTCTCTTTATTTACACTTTCCCTTTTTCTCTCCCC
CCCCCCCCTTTTTTTTTTTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGC
TCTGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAAC
TTTGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATG
CTCCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTT
AGGAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCT
ACTTCATGTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTG
TGTGTGNGCGTGTNTNNAATACTTCTCCTGTGTCCCGCCTTTTTTTTCAC
TCATCGGTTTTATGNCTGAATCTTGACCCTTTTTTTTTTTTCCCCCCTTC
TATTTATACCTCTCTTAATTTCCTTATTCCCTTTATTTTCCACTTTTATT
TTTATTCCCCTTCATATAAATTTCCTCCTCCCATATACCCTCTCACTCCC
CTTTTTTTTCTTTTTTTTTATTCCCTTCCCCCCTCTTTTTTACACTATTC
GCTCAACTCCTTATTTTTCCTTTTCTTTCTCATTCTCCCCTCCCCCTCTT
TATATTTTTCTCCCGTTTTATCTCTAACTATTTTCTCCCCCTTCCACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_j18.g1 MSMg01no404_j18.g1 CHROMAT_FILE:
MSMg01no404_j18.g1 PHD_FILE: MSMg01no404_j18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:21 2005
         (340 letters)



>mm_chr18_40467476_40468214
          Length = 739

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 739
Length adjustment: 9
Effective length of query: 331
Effective length of database: 730
Effective search space:   241630
Effective search space used:   241630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)