Query= MSMg01no404_n14.b1 MSMg01no404_n14.b1 CHROMAT_FILE:
MSMg01no404_n14.b1 PHD_FILE: MSMg01no404_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:39 2005
(249 letters)
>mm_chr18_24485876_24486524
Length = 649
Score = 474 bits (245), Expect = e-138
Identities = 248/249 (99%)
Strand = Plus / Plus
Query: 1 cctccttttctttaagtccaagtgttgtttttcactgtttaccactatacacagactgtt 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctccttttctttaagtccaagggttgtttttcactgtttaccactatacacagactgtt 260
Query: 61 aacaaaggacaaaactgcagctttcttcaccaagaagcctagcacttcttcatctgtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacaaaggacaaaactgcagctttcttcaccaagaagcctagcacttcttcatctgtcct 320
Query: 121 aaggcgttctgcgtccccctctctgctccccaacaatcctatgtgtagaatatctgtcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaggcgttctgcgtccccctctctgctccccaacaatcctatgtgtagaatatctgtcag 380
Query: 181 ctccagatgggataggataaaggataagaaattgttccatctacctctttagtttccttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccagatgggataggataaaggataagaaattgttccatctacctctttagtttccttg 440
Query: 241 gctggtttg 249
|||||||||
Sbjct: 441 gctggtttg 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space: 153600
Effective search space used: 153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no404_n14.g1 MSMg01no404_n14.g1 CHROMAT_FILE:
MSMg01no404_n14.g1 PHD_FILE: MSMg01no404_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:39 2005
(248 letters)
>mm_chr18_24656132_24656785
Length = 654
Score = 431 bits (223), Expect = e-125
Identities = 243/253 (96%), Gaps = 6/253 (2%)
Strand = Plus / Minus
Query: 1 catttgacaggaacaagaacctgttgtatactgtagcaaagtgagcttttgtgtgaaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 453 catttgacaggaacaagaacctgttgtatactgtagcaaagtgagcttttgtgtggaagt 394
Query: 61 ttggcatgggtagattttgaggtttgatactggattgagacaatggaacaaaacagtagg 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 393 ttggcatgggtagattttgaggtttgatactggattgagaccatggaacaaaacagtagg 334
Query: 121 agcaattaacaaggcagtgcagtttcttgtgtcctacaatcaaagtg------caggatt 174
||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 333 agcaattaacaaggcagtgcagtttcttgtgtcctacaatcaaagtgcagcaacaggatt 274
Query: 175 ttatggtctggttctagtatgcaaccaagtgtgatagcaatagcttgtggagtttgaggg 234
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 ttacggtctggttctagtatgcaaccaagtgtgatagcaatagcttgtggagtttgaggg 214
Query: 235 ccctctctgatca 247
||||||||||||
Sbjct: 213 gcctctctgatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 654
Length adjustment: 9
Effective length of query: 239
Effective length of database: 645
Effective search space: 154155
Effective search space used: 154155
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
