Query= MSMg01no404_n19.b1 MSMg01no404_n19.b1 CHROMAT_FILE:
MSMg01no404_n19.b1 PHD_FILE: MSMg01no404_n19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:40 2005
(549 letters)
>mm_chr18_16409677_16410626
Length = 950
Score = 841 bits (435), Expect = 0.0
Identities = 450/455 (98%), Gaps = 2/455 (0%)
Strand = Plus / Minus
Query: 5 gaattcttaag-attttccactcttatgacaaagcctacccattacagctaaataaataa 63
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaattcttaagaaatttccactcttatgacaaagcctacccattacagctaaataaataa 396
Query: 64 caatgtcctcgtggtgaagattaagcacacttgtattaatgtaaatgagaaagggatgag 123
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 395 caatgtcctcgtggtgaagattgagcacacttgtattaatgtaaatgagaaagggatgag 336
Query: 124 acactgtgcattcagccagtactggacaccagagagttagagtgtgttctgtatgacaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acactgtgcattcagccagtactggacaccagagagttagagtgtgttctgtatgacaat 276
Query: 184 gaattcaacaacagcaactactgaatttcaacaagacttaagactgagagtataatgcat 243
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaattcaacaacagcaacaactgaatttcaacaagacttaagactgagagtataatgcat 216
Query: 244 tatttacatg-ttttttttccaatgctagggattgaacccagaaatttgtgtatgccagg 302
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 tatttacatgtttttttttccaatgctagggattgaacccagaaatttgtgtatgccagg 156
Query: 303 caaactctactatcggttcatacctcaggtcctattttcttttaatttagtaaaatagaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 caaactctactatcggttcatacctcaggtcctattttcttttaatttagtaaaatagaa 96
Query: 363 tcaacccacctataaaaatttcagaatttataggatatatgaggcaaaataaaataacct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 tcaacccacctataaaaatttcagaatttataggatatatgaggcaaaataaaataacct 36
Query: 423 ttctgtgtataagaggacgtagaagataaagatgt 457
|||||||||||||||||||||||||||||||||||
Sbjct: 35 ttctgtgtataagaggacgtagaagataaagatgt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 950
Length adjustment: 10
Effective length of query: 539
Effective length of database: 940
Effective search space: 506660
Effective search space used: 506660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no404_n19.g1 MSMg01no404_n19.g1 CHROMAT_FILE:
MSMg01no404_n19.g1 PHD_FILE: MSMg01no404_n19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:40 2005
(567 letters)
>mm_chr18_16225910_16226876
Length = 967
Score = 1058 bits (547), Expect = 0.0
Identities = 562/567 (99%)
Strand = Plus / Plus
Query: 1 tctaacattggagtttatttttatgtctaaagattactcatttaccaataataaataaaa 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctaacattggagtttatttttatgtctaaagattactcatttatcaataataaataaaa 260
Query: 61 cgccattttaattattgtaaatcaatgactttcaattctataggcacactacaaaacagt 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccatttgaattattgtaaatcaatgactttcaattctataggcacactacaaaacagt 320
Query: 121 gacacacagtgagtcaaactggtcctatactttgctggggctaaggagaaaggagtcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacacacagtgagtcaaactggtcctatactttgctggggctaaggagaaaggagtcaaa 380
Query: 181 agactggtttacaaatgccagatgacaaagtgtaaatctgattctagtcactgagtttag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agactggtttacaaatgccagatgacaaagtgtaaatctgattctagtcactgagtttag 440
Query: 241 acatactgatttacatgtgaacttcaaaggtatgcactaccgtgtctctctctcaaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatactgatttacatgtgaacttcaaaggtatgcactaccgtgtctctctctcaaggtc 500
Query: 301 agaatcaaataattcattttaattgaggtctcagtgatgttacacagcccaagatggctg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 501 agaatcaaataattcattttaattgaggtctcagtgatgttacacagcccaagatgactg 560
Query: 361 ttttccattcccaaatatgtaacaatcctgagaagctccccagcccagtctaccttccat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttccattcccaaatatgtaacaatcctgagaagctccccagcccagtctaccttccat 620
Query: 421 cactccactgggaaatctcagtgtctttcttctccaatttttagaccatttttccatcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactccactgggaaatctcagtgtctttcttctccaatttttagaccatttttccatcca 680
Query: 481 cctgcctactgctccccataagagtatatctgatctgattcctatgtgggcttcacaaaa 540
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 681 cctgcctactgctccctataagagtatatctgatctgattcctatgtgggcttcacaaca 740
Query: 541 tttagtaatctaagtatttaatttctc 567
|||||||||||||||||||||||||||
Sbjct: 741 tttagtaatctaagtatttaatttctc 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|