XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTTTATCTCTGTTGCCCATTTTTAATAGGGTTATTTGGTTCTCTGGAGTC
TAACTTCTTGAGTTCTTTGTATATATTGGATATTAGCCCTCTATTGGATG
TAGGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCCATTTTGTCCTA
TTGTCAGTGTCCTCTGCCTTACAGAAGCTTTGGAATTTTATGAGGTCCCA
TTTTTCCACTCTTGATCTTACAGCATAAGCCATTGCTGTTCTGTTCAGGA
ACTTTTTCCCTGTGCTCTTGTGTTCAAGGCTTTCCCCTACTTTCTCTTCC
ATTAGATTCAGTGTATCTGGTTTTATGTTGAGGTTCTTAATCCACTTGGA
CTTGAGCTTTGTACAGGGAGATCAGAATGGATCAATTTGCATTCTTCTAC
GTGTTGATGGCCAGTTGAACCGGCACCATTTGTTGAANATGCTGTCTATT
TTTTCCACTGGATGGTTTTAGCTCCTTTTGTCAAGATCAAGTGACATATG
TGTATGGATTCATTTCAGGGCCTTGAATCCATTTCCCTTGATCTACTGGG
CCGGGCACGGATCCAAACCATGGAAGGCCTATCACTCTTGCCCTGTAATA
AAACTTGTCCCCCCGTCTTTATTATTCCCCACAAATTTTTTTTAATGTTG
AAACAACATTTTCCTATATGTGGATGTTCTTGCTTTATACAAAATCCTTT
ACCACCTGGCTCTTTTCTTTCCTCCTN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTGTGCTCCAGCTCTTAAGCACCAATTGCTACTCACC
AGTATGAAGAAATATCACAAATAAGTAATGGATGGCCCTGGGCTAGTGGG
TGTTCCCTCAAGACAATCCACTTTTGTGTCCATGTAAGTCTTAAGAGGAG
GATAATTCTATGCCACATCACACAGGATCTCACAGAAGACTTTGTGATAA
TGGAAAACAAGTCTCAGGAGCCTAGAAAAGCAGGCATTAATCTGGCATAT
GTATCATTCCTAACTAAATCATACTTAGATATGCTAAGGCCACCTGGTAT
TTGTCTCTTTATGATGGTTCAACCTTATCATTAAATTGCCAGGATTTATA
ATCACCATAAAGACACACATCTGGATGTATATATGAGAATGTTTCCAGAA
AGGTCTGAGAGAACGCATCCTGAATGGCACAGCAACATCCCAGGAACCAG
GATCTCAGGCCGGATTAAAGACAAGGCAGACTCAGCACCAGTTACCTATC
ACCCTCTGCTTCCTGACAGGAGATCCATGCNATCTCTCACTCCCGCTGCT
GTGGCTCCCAGACTGCAAACTGGGGGAGAGAAAAGAAATTTTCCTCTCCA
AATTACCTTTGTCAGGGAATTTGTCCCGCTTTGGAGAAAAACAAAACTAA
AAACTCCTAATCCCTTTGAAGGAAGTTTTTTCGGACAGGCCAATTTTTCT
CGTAAGTTTAAACGGCCCCCCC

Query= MSMg01no404_n22.g1 MSMg01no404_n22.g1 CHROMAT_FILE:
MSMg01no404_n22.g1 PHD_FILE: MSMg01no404_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:41 2005
         (436 letters)



>mm_chr18_13582459_13583294
          Length = 836

 Score =  812 bits (420), Expect = 0.0
 Identities = 432/436 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgctccagctcttaagcaccaattgctactcaccagtatgaagaaatatcacaaataa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgtgctccagctcttaagcaccaattgctactcaccagtatgaagaaatatcacaaataa 436

                                                                       
Query: 61  gtaatggatggccctgggctagtgggtgttccctcaagacaatccacttttgtgtccatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gtaatggatggccctgggctagtgggtgttccctcaagacaatccacttttgtgtccatg 376

                                                                       
Query: 121 taagtcttaagaggaggataattctatgccacatcacacaggatctcacagaagactttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taagtcttaagaggaggataattctatgccacatcacacaggatctcacagaagactttg 316

                                                                       
Query: 181 tgataatggaaaacaagtctcaggagcctagaaaagcaggcattaatctggcatatgtat 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 315 tgataatggaaaacaagtctcaggatcctagaaaagcaggcattaatctggcatatgtat 256

                                                                       
Query: 241 cattcctaactaaatcatacttagatatgctaaggccacctggtatttgtctctttatga 300
           |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 255 cattcctaactaaatcatgcttagatacgctaaggccacctggtatttgtctctttatga 196

                                                                       
Query: 301 tggttcaaccttatcattaaattgccaggatttataatcaccataaagacacacatctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 tggttcaaccttatcattaaattgccaggatttataatcaccataaagacacacatctgg 136

                                                                       
Query: 361 atgtatatatgagaatgtttccagaaaggtctgagagaacgcatcctgaatggcacagca 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 135 atgtatatatgagaatgtttccagaaaggtctgagagaacgcatcctgaatggcacagta 76

                           
Query: 421 acatcccaggaaccag 436
           ||||||||||||||||
Sbjct: 75  acatcccaggaaccag 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)