BAC Information

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BAC

Clone NameMSMg01-404O13
Chromosome18 (Build37)
Map Location 63,394,345 - 63,394,490
singlet/doubletsinglet
Overlap gene9030411M15Rik
Upstream geneHtr4, Fbxo38, Spink10, EG408198, 2700046A07Rik, Apcdd1, Napg, 9430028L06Rik
Downstream geneLOC627792, Txnl1, Wdr7, LOC629436, LOC667773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-404O13.T7 (MSMg01no404_o13.b1)MSMg01-404O13.TJ (MSMg01no404_o13.g1)
ACCAG503464AG503465
length7811,433
length of high quality
(start - end)
146 (114 - 259)---
definitionCHROMAT_FILE: MSMg01no404_o13.b1 PHD_FILE: MSMg01no404_o13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:44 2005CHROMAT_FILE: MSMg01no404_o13.g1 PHD_FILE: MSMg01no404_o13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:19:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTAAACGAATCACTACTCATTACTATGCGCGGAATTCTTCAGTT
TTCCATTATTTTGGGATAAGNGATGACATTCAAGGAAAGAGATCTTGTGT
CTAGACAAAACTCAAATCTAAGTTAGTACATCTTTGCTATTGGGGACTTA
GAGATAGGTTCTATTAGGGTATAAATGTGGTGTTTTCATCTGTATGACTT
AATACCCAGCAGTTGTTTTAGTGGGTTCAGCAGGTTCTGTCTTTGTCACT
GTGTCACTGTAGCTGAATTAGCAGCAGATAGGGAAGGATAATCCACCCAC
AGCCTCTTCGTCCTTGGACCATGGGTGCTTAGCTCCTGCGCCTCTGTTTT
TCCTTGACAGAGACATCATGCCATAGGGCCTAGCAGAGCATTGCTGTTTA
CTGCCCAGTATCTGTAAAGCATACAGCTGGATGATATCCTTTTCGTTTGT
TCAAGACTTCTCTTTCCAGAGTTTGTCCTGAATATCTGCCTCCTCTTTTG
TTGTTTCTTATTTTCCTTTTTTTTTTTTTTATCCTTAGTTGCCTCCCCCT
GCGTTTTTCATTCTCCCATTTCCCTTTTCTCTTTTTTTATTTTTTTCTCC
TCCTATCTCCCTCTCTTCCATTTTTGTTTTCCCCATTTTGTATCTCCCCC
TATTTGGTTTTTCTTTTTTTTTGTCCTCTTCTTCCAACTCCCACCCTCCC
CTCTCTCCTTTTTTCCTTTTTCCCCCCCCTTCCTTCCTCTTTTTTTTCTT
TACCCCTCCCCCCTTTTTTTTCCTCTCTTTG
TCTTTTGCGCGTTTGTGTGTTGCGGGCGTGTTATGTATTCTCTCTCTCAT
TTATTATAACTGTAGATTNTTAAGAGATATTATTATATTAATCACACACA
CAGACTATCTACTAATAGAGATGGAGNTCATCCGCGCGGTGAGTGTGTGG
TGGGGTGTGTGGAAGGCGCGCGCCCGCAGGTATGTGGCTTCTCACATCAC
TCCCATAATATACACTACACGCGCGCTTAGTACGCGCGACGCACCGCGCG
GATTATTATGACTTTTGTACGGCGACAGTTGTACTGAGCGAGAAGAGCAA
TCCGGTTGAAAAACGACCACATACGNTTACACAATAAAAGAATAATAATA
GAATATGTAAGTAGAGGGAGGAGAAGTGTATGTTGTCTGCTCTTGGCCGC
GTCNCATTTTTCTNTCATCCGGCACCTCTAATATTTTGGTAGATATTAAT
TATATACGCCGCGCCGGAGTGTAAGCGCTTCTTATTTAATATCAACATTC
CAGCAGCCACAATAAAGGATCAAAAAGTGAAAGACGGTCATCGTCTACGG
TGGACCCGCTACACCGAGCTCTGACATTATATAACCCAGACACACTAAGG
CGCCGCGCTAGAGAGTAATTGTATAGCGCCGGACGATAAGCGTTTATTTA
TATTAGACTAGCGCGGTACTCCACGCTATGCACTAATATTCGGCGCGGCC
GCGGCGCGGGNGAAAGCGATGAGAAGGAGCAAGCTNCGCACATTATGACC
CCCGAACGATCAATATATATAATACGCCGGCCGCAATCGACTAGATAGGG
AACAGAATGAAATAATAAGGAGTTGATTTATGTGTCTTACGTCTGATGGT
ATACACTGTGATGAGTATATATATATATCGCACTCTACTAATAACACACA
AATAGCATCGCGCTGTATTATAATAAGTGTCTAACTTACGGTCGCGCGAG
ATATCTGTCTGCTCTATTATCATATAAATCACATTTATCGCTCTGACGTC
GCGACGCGCNGCGCAGTGCGCGGAGATATATGAGCGTATAGAAACGAAAT
AGATCGCAGCGCTCGAGGGATATATAATAATAGATCGCAGCCGATCACAC
AAGAATATAATAATTGTAATATGACAGGCGCACGCTGAGCCGGATAATGT
GTNATCGTGATTGTGCCGTATTANTGTACTACTGCTCGCCGCGCACCTCT
CGATTATAATATTAATATATACGTGCGTCCTAGACTGCTGATATATATAG
AGGTTGACTCGCTATGCCGCAGAACATAGACGATCGTATACGAGATTACT
ATGGTTCGAGAGAGTTATGACGCAACGCCGATGAGATGTGCGCGTCGCGC
TATATGTGCGCATCTCGCGCAGTCTATTAACGAATATCCTCCGCGCTCGT
CATCATTATAATTATCTATATTTCTGATCAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no404_o13.b1 MSMg01no404_o13.b1 CHROMAT_FILE:
MSMg01no404_o13.b1 PHD_FILE: MSMg01no404_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:19:44 2005
         (146 letters)



>mm_chr18_63394145_63394690
          Length = 546

 Score =  252 bits (130), Expect = 1e-71
 Identities = 142/146 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatctaagttagtacatctttgctattggggacttagagataggttctattagggtata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 aaatctaagttagtacatctttgctattggggacttagagataggttctatgagggtata 260

                                                                       
Query: 61  aatgtggtgttttcatctgtatgacttaatacccagcagttgttttagtgggttcagcag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtggtgttttcatctgtatgacttaatacccagcagttgttttagtgggttcagcag 320

                                     
Query: 121 gttctgtctttgtcactgtgtcactg 146
           |||||| |  ||||||||||||||||
Sbjct: 321 gttctgacactgtcactgtgtcactg 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)