BAC Information

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BAC

Clone NameMSMg01-405G02
Chromosome18 (Build37)
Map Location 32,142,314 - 32,142,806
singlet/doubletsinglet
Overlap geneMyo7b
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33, Sft2d3, Lims2, Gpr17
Downstream geneIws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36, Camk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405G02.T7 (MSMg01no405_g02.b1)MSMg01-405G02.TJ (MSMg01no405_g02.g1)
ACCAG503825AG503826
length758765
length of high quality
(start - end)
499 (49 - 547)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no405_g02.b1 PHD_FILE: MSMg01no405_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005CHROMAT_FILE: MSMg01no405_g02.g1 PHD_FILE: MSMg01no405_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:20:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATC
CGCGGAATTCTTCTCTCTGCATCCCATTTCCTCAGAGCGATGCTAGGCTT
AGCTGCTACTGCCTGGCTTGGCTTGGGGGGATTTGATGAAACTTGCGTGG
CAAATGCTCTGATCCTCTGATCATCTCTCAGTCTTGCTTATCTTCCCTTT
CCTCATCTCTTTCTCTGGCCTCCCGCTTGTTATACAGCCAAGAGTGACCT
TAAATCCTCATCTTTCTGCCTCCAGAACTCCTGTGCAGGAATAGCAAGTA
CGCCCCACCTTGTCTGGGTTGTGTGATGCTGGGGACCGGCTCAGGGCTTT
GCTCATTGTAGGCAAACACTCTAGCAACTGAGCTATAGCTTCTTTCTCAA
AAATCTGTTTTTTTGTTTTTAATGTTAGTTTGAATTTAGCTGGAGTCAAA
GCCAACATTCGTAGTTCAGGAGACCATCTCCATTTGTGATTGCAAAATCC
CAAGCATCCGTGACATTCCTGACTCATGAATTCCCAAATACTGGGTTCAG
TGGATGGTGTTTCCACTCAGCTTCCTGGGTCCTTCTCTAGTGGACACCTT
TCGCCCTTGCCACATATCTGTGAAGATCTGTCGTGCTGAACGACACTGTC
CCTTGCCTGTTTGTCTTGAATCTGCTCCATCACTGAATTGCCAGTTCCGT
CTGTTTCCTGCCATAAAACTCTGGGCTTTGGAAGGTCTTCCCATGAACTT
TTTCGATT
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGAAGTAGGTTCTAACAG
CAGCAAAAGAATGACTCAGCCGCAGGAGCAACAAACACACCAGTGATTGG
GAGAGCAAGAAGGTACAAAAGCAAAACTTACTTTTTCGATGTGCTTTTGT
GTGTGATGCCACCAGAAGTTGTGGACCAGACTTAGGGAGAATCTTCCCAC
CTCAAAAGAGCCAATCAAGAAAATTCCTCACTGGTGTGCCCAGCTGTTAA
GGTTTTAGTTCTGGATGTAGCCAAGTATACAACTGGAATTAGCCATCATA
ATCTCTATTTTCTATATTTAGAGACTATAAAATTGTGTAGTTGTATATAT
TTTTAAAAATCATCAACAGGACCTTTGAAAAAAATCTATGCTGATGTAGT
GGGGTTTTGTTGTTGTTGCCCTTCTTTCCCCACTCTTACCTTTTTTCTTT
TACCTTCCTCCTCTTTTCTCCTCTCCCCTTTTTTTGTTCTTTTTTTTCTC
TCTCTCCTCAAACACCTTTTCTTCTTCCCATTTCTTTTTTACCCTTTTAT
TTCCCCCTTCTTATTTCTCCTCTTCCATTTTCTTTTTTCCTCTTTTTTCC
CCCACTTTTCTTTCTCTTTTCTCCTTCCTATTTTTTCTTCTCCTATTTTT
CCCTTATTTTTTTTCTTTCATCCTTTTCCCCTCCATCTTTATCTTCCCTT
TTCTCTCCACCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_g02.b1 MSMg01no405_g02.b1 CHROMAT_FILE:
MSMg01no405_g02.b1 PHD_FILE: MSMg01no405_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:20:21 2005
         (499 letters)



>mm_chr18_32142109_32143006
          Length = 898

 Score =  924 bits (478), Expect = 0.0
 Identities = 490/494 (99%), Gaps = 1/494 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcttctctctgcatcccatttcctcagagcgatgctaggcttagctgctactgcc 65
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcttctcactgcatcccatttcctcagagcgatgctaggcttagctgctactgcc 265

                                                                       
Query: 66  tggcttggcttggggggatttgatgaaacttgcgtggcaaatgctctgatcctctgatca 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 266 tggcttggcttggggggatttgatgaaacttgcgtggcaaatgctctgatcctctgatct 325

                                                                       
Query: 126 tctctcagtcttgcttatcttccctttcctcatctctttctctggcctcccgcttgttat 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tctctcagtcttgcttatcttccctttcctcatctctttctctggcctcccgcttgttat 385

                                                                       
Query: 186 acagccaagagtgaccttaaatcctcatctttctgcctccagaactcctgtgcaggaata 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 acagccaagagtgaccttaaatcctcatctttctgcctccagaactcctgtgcaggaata 445

                                                                       
Query: 246 gcaagtacgccccaccttgtctgggttgtgtgatgctggggaccggctcagggctttgct 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 gcaagtacgccccaccttgtctgggttgtgtgatgctggggaccggctcagggctttgct 505

                                                                       
Query: 306 cattgtaggcaaacactctagcaactgagctatagcttctttctcaaaaatctgtttttt 365
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cattgtaggcaaacactctaccaactgagctatagcttctttctcaaaaatctgtttttt 565

                                                                       
Query: 366 tgtttttaatgttagtttgaatttagctggagtcaaagccaacattcgtagttcaggaga 425
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 -gtttttaatgttagtttgaatttagctggagtcaaagccaacattcgtagttcaggaga 624

                                                                       
Query: 426 ccatctccatttgtgattgcaaaatcccaagcatccgtgacattcctgactcatgaattc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccatctccatttgtgattgcaaaatcccaagcatccgtgacattcctgactcatgaattc 684

                         
Query: 486 ccaaatactgggtt 499
           ||||||||||||||
Sbjct: 685 ccaaatactgggtt 698


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 898
Length adjustment: 10
Effective length of query: 489
Effective length of database: 888
Effective search space:   434232
Effective search space used:   434232
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)