BAC Information

Click to search

BAC

Clone NameMSMg01-405O22
Chromosome18 (Build37)
Map Location 26,533,228 - 26,533,477
singlet/doubletsinglet
Overlap genenone
Upstream geneBrunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
Downstream geneEG665977
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-405O22.T7 (MSMg01no405_o22.b1)MSMg01-405O22.TJ (MSMg01no405_o22.g1)
ACCAG504246AG504247
length822805
length of high quality
(start - end)
277 (50 - 326)405 (79 - 483)
definitionCHROMAT_FILE: MSMg01no405_o22.b1 PHD_FILE: MSMg01no405_o22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:04 2005CHROMAT_FILE: MSMg01no405_o22.g1 PHD_FILE: MSMg01no405_o22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:21:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTTTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTGTTATTTACCCTCCTCATAGTTGATTTGGTTATTTTATG
TGACTTCTCTTTAATATGTTTATTACTAGAAGTAGCATATACAAGTTGAC
TATTGGAAAGAAATAGCATTTACTTAATTTCCATTGGACATCAAAACACA
TTGTGGAAGAAGGGCTTCCTGGAGTTGAGACTTGGAGAAATGGAATCAGA
GATACTCTGAGAGATAAATGAGCAGGAAAGACTTATTGATGGAGCATGTG
CATAACTAAATGTGGAAGTTACTACTGTTTATAATGAGGTCCGGAGAAAG
AAACTGGAGGAAGAGGAAGCACAAATCAGGGAAGGAGGATAATGAAGGAA
CAGAATGGAAAAGGTAGCTGTGGTTGTGACTCTCCCAGCAAGGAGAGTTA
CCGGCCATCTGCGGCTGGACATAGGCACCCCTACCAGGATAAACCCTCCC
CCTGGGACCCTTCTCCAGGATATGGACTATAAAGCTCATAATACGACCCG
GTGAAACAGGTAAACTTTTTTTACTCTCCTTTCCATTCCTCATATTGGTT
GGGGTTTGTATACATCGTCAGCTTCTCTCCATGCCTTTCCCTGTGGTTCT
CCCATTTACACGCGCCCCTCTTCTTCTTCCCCCATTATTCTACTCTTATC
TTTACTCTCTTAATTTTCCAACACCCTTCTTGACTATTCTTCTCTCTCCA
CTTGACATCTCCTTCACCTTCTTATTCTTCTTCCTTTTTTTCTTCTTTTC
CCTCCTCTCTTGTTTTCACCTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATGAAAATTAAGGCACAATAT
GCCCAAAATTATGGGAATCGAAGAAAGCTATGCTAAGAGGAAAGTTCATA
GCACTATGTGCCTTCATAAAGAAACTGGACAGCTCTCATGCTAGAAACTT
AACTGCACACCTGAAAGCTCTAAAGCTAAAAGAAACAAAAGCCCTAAAAA
GATGTAGACAGCACGTGCAGCTTGGTCTTCACATGATCCTGAACAACCAG
AATGGGAGCTATTCTAAAAGGTATTGCCTAAACATGGGATATGTTCTTCT
AGCTGGGCTGCCTGGTCTGGCTGGCCTCAGTGTGAGCCAAAGCACTTAGC
TCTGCAGAGACTTGAATTGCCAGTGTGGGAGGATAACCAGGAGGCCCCCA
CCCACTCAGAGATGAAGCAAAGAGGGGAAGGATTGTGAGAACTGGTTACC
GGTATGATGGCAATAAGCAGGATGTATAATGAATTAAGGAAAATATATAA
AATTTAATTTNAAAATCCTANATAGACCAACCTAAAGAAAACCTGGCGAA
ATACCAAACTTTCTAATTTAAAAAATAACAAGGGGTTCTTTAACAAACTC
CTGGGAATTCTAAAGAATTATTATGGCTTTTTTTTCATAACCCCTATTTC
TCATAACCGGGTATTACCCCACCCAAAAAAACCAACAGTTTTGGTTTTCT
TTTCTGTCTTTTCGCCCTTCCCAACTACTCTTCAACCCTCTGCTTCCCTC
CTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no405_o22.b1 MSMg01no405_o22.b1 CHROMAT_FILE:
MSMg01no405_o22.b1 PHD_FILE: MSMg01no405_o22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:04 2005
         (277 letters)



>mm_chr18_26533005_26533681
          Length = 677

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Plus

                                                                       
Query: 24  tcctcatagttgatttggttattttatgtgacttctctttaatatgtttattactagaag 83
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 tcctcatagttgattttgtcattttatgtgacttctctttaatatgtttattactagaag 283

                                                                       
Query: 84  tagcatatacaagttgactattggaaagaaatagcatttacttaatttccattggacatc 143
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tagcatatacaagttggctattggaaagaaatagcatttacttaatttccattggacatc 343

                                                                       
Query: 144 aaaacacattgtggaagaagggcttcctggagttgagacttggagaaatggaatcagaga 203
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aaaacacatcgtggaagaagggcttcctggagttgagacttggagaaatggaatcagaga 403

                                                                       
Query: 204 tactctgagagataaatgagcaggaaagacttattgatggagcatgtgcataactaaatg 263
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tactctgagagataaatgagcaggaaagacttattgatggagcatgtgcataactaaatg 463

                     
Query: 264 tggaagttac 273
           ||||||||||
Sbjct: 464 tggaagttac 473


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)