Query= MSMg01no406_a18.b1 MSMg01no406_a18.b1 CHROMAT_FILE:
MSMg01no406_a18.b1 PHD_FILE: MSMg01no406_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:13 2005
(553 letters)
>mm_chr18_47975316_47976269
Length = 954
Score = 861 bits (445), Expect = 0.0
Identities = 460/467 (98%), Gaps = 5/467 (1%)
Strand = Plus / Minus
Query: 92 tcaccttaacgttaaaatatagtttaagaaatttctgcctctgtctagaaagatggctca 151
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 tcaccttaacgttaaaatatagtttaagaaatttctgcctctgtctagaaagatggctca 895
Query: 152 gcagttgagagtccttccacagaacccaaggtcaggaaactggcattgatgtcagacaat 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gcagttgagagtccttccacagaacccaaggtcaggaaactggcattgatgtcagacaat 835
Query: 212 tcacagctactgtcacttatagttccaggatattccactcttctggccttggtagacacc 271
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 834 tcacagctactgtcacttatagttccaggagatcccactcttctggccttggtagacacc 775
Query: 272 cctcacatgtagcatgtactcacaacacac----agacagaaataaaaacaaatctaatc 327
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 774 cctcacatgtagcatgtactcacaacacactcacagacagaaataaaaacaaatctaatc 715
Query: 328 taaaaattgagttctgtttactttgaaaccatctgtaatcatcctttacacttcatgatt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 taaaaattgagttctgtttactttgaaaccatctgtaatcatcctttacacttcatgatt 655
Query: 388 aaaagacagtcagatattaccaacaacaagaatgatacataaatatcctaactttagaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaaagacagtcagatattaccaacaacaagaatgatacataaatatcctaactttagaat 595
Query: 448 agaaactccttccatgatcgatcagttctaataaggcaaaacatac-acattatttgacc 506
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 594 agaaactccttccatgatcgatcagttctaataaggcaaaacataccacattatttgacc 535
Query: 507 cttacaagaaaatgaataaatttatatatttaaatgaggaaacaaaa 553
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cttacaagaaaatgaataaatttatatatttaaatgaggaaacaaaa 488
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_a18.g1 MSMg01no406_a18.g1 CHROMAT_FILE:
MSMg01no406_a18.g1 PHD_FILE: MSMg01no406_a18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:21:14 2005
(497 letters)
>mm_chr18_47781333_47782233
Length = 901
Score = 944 bits (488), Expect = 0.0
Identities = 497/502 (99%), Gaps = 5/502 (0%)
Strand = Plus / Plus
Query: 1 ccaattttctagtcaccatagagagacaattcaaaatcatctaaatcatgatgttctaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ccaattttctagtcaccatagagagacaattcaaaatcatctaaatcatgatgttctaga 259
Query: 61 cttttcaaaatacatatcttttctatttttttttt-atttctgtgcttgagactttgagc 119
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 260 cttttcaaaatacatatcttttctatttttttttttatttctgtgcttgagactttgagc 319
Query: 120 tggacaatgacgatgacgacgatgataatgatgatgattaatatcagtactatattatga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tggacaatgacgatgacgacgatgataatgatgatgattaatatcagtactatattatga 379
Query: 180 aatatacccaacaacccactgcaagaatgcttgtttgttctaaggaaaatggcttatgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aatatacccaacaacccactgcaagaatgcttgtttgttctaaggaaaatggcttatgaa 439
Query: 240 tataacattccagcaagagaagaatgatcaaactggctacaaacatctacatttagaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tataacattccagcaagagaagaatgatcaaactggctacaaacatctacatttagaaat 499
Query: 300 gttagatagccagaaataaaaaaaaa----catttgaatatacatatggacaagtgcatg 355
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 500 gttagatagccagaaataaaaaaaaaaaaacatttgaatatacatatggacaagtgcatg 559
Query: 356 cgaatattatgagaagaatagaacatgacctgattgaacatgaacacacttgccattgta 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cgaatattatgagaagaatagaacatgacctgattgaacatgaacacacttgccattgta 619
Query: 416 ttaatttacaaatgtccttgtaaacacgtagaaataattgaacctgtgagggtaatattt 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaatttacaaatgtccttgtaaacacgtagaaataattgaacctgtgagggtaatattt 679
Query: 476 tcttcctggagaggatgtgggg 497
||||||||||||||||||||||
Sbjct: 680 tcttcctggagaggatgtgggg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 901
Length adjustment: 10
Effective length of query: 487
Effective length of database: 891
Effective search space: 433917
Effective search space used: 433917
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
