Query= MSMg01no406_k04.b1 MSMg01no406_k04.b1 CHROMAT_FILE:
MSMg01no406_k04.b1 PHD_FILE: MSMg01no406_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:01 2005
(237 letters)
>mm_chr18_59980331_59980962
Length = 632
Score = 294 bits (152), Expect = 3e-84
Identities = 214/236 (90%), Gaps = 7/236 (2%)
Strand = Plus / Plus
Query: 1 ataagctgaataaaccttttcctccccaaattgctatt-tggccgtagtgttttgtcaca 59
|||||| |||||| || |||||||||||||||||| || ||| | | |||||||||||||
Sbjct: 201 ataagccgaataagccctttcctccccaaattgct-ttctggtcatggtgttttgtcaca 259
Query: 60 tctataaaaaccctaactaggaccatcctacaaagtcaacatcctataaagtctaagcac 119
| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccaatagaaatcctaactaggaccatcctacaaagtcaacatcctataaagtctaagcac 319
Query: 120 acacaagctgataaggtgaaatataatgatatatttgtatgattcaaaaatacggagtaa 179
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct: 320 acacaagctgataaggtgaaatataatgatatatttatatgattcaaaaatacacagtaa 379
Query: 180 gatacatacatagttgcggagaaaaaaagataacagttngggaaaagagaaatccc 235
|||||||||||| |||| ||||||||| || ||||| |||||||||||||||||
Sbjct: 380 gatacatacatacttgcagagaaaaaa-ga---cagtt-gggaaaagagaaatccc 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 632
Length adjustment: 9
Effective length of query: 228
Effective length of database: 623
Effective search space: 142044
Effective search space used: 142044
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no406_k04.g1 MSMg01no406_k04.g1 CHROMAT_FILE:
MSMg01no406_k04.g1 PHD_FILE: MSMg01no406_k04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:01 2005
(244 letters)
>mm_chr18_60137076_60137719
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%)
Strand = Plus / Minus
Query: 1 agagagtctacagcaaagggtacttcattagtctattactcaagctctctgttgtagatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agagagtctacagcaaagggtacttcattagtctattactcaagctctctgttgtagatg 385
Query: 61 tacttatcacagtgaagaggatgcacagagccaaacaaatggagctctctcactcaaggg 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tacttatcacagtgaagaagatgcacagagccaaacaaatggagctctctcactcaaggg 325
Query: 121 agatattgaagtttttactaattagatttgcttttagacctttcacacatatacataatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agatattgaagtttttactaattagatttgcttttagacctttcacacatatacataatg 265
Query: 181 catactgacaaatctcacccccacccctctctcaccctgttttagtttccattctcatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 catactgacaaatctcacccccacccctctctcaccctgttttagtttccattctcatca 205
Query: 241 cata 244
||||
Sbjct: 204 cata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
