Query= MSMg01no406_m18.b1 MSMg01no406_m18.b1 CHROMAT_FILE:
MSMg01no406_m18.b1 PHD_FILE: MSMg01no406_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:14 2005
(472 letters)
>mm_chr18_44178609_44179480
Length = 872
Score = 791 bits (409), Expect = 0.0
Identities = 452/469 (96%), Gaps = 8/469 (1%)
Strand = Plus / Plus
Query: 5 ggaattctctatg-tccactctatctgaagtcattttcccaagctagatggcatagaact 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattctctatgatg-actctatctgaagtcattttcccaagctagatggcatagaact 263
Query: 64 ttataatgtagaaacctctgaatgaaaataatgtgttatataagataaacatgagtttga 123
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tgataatgtagaaacctctgaatgaaaataatgtgttatataagataaacatgagtttga 323
Query: 124 tatctcgtttttgatgtttttcacgtaggatatttctagtgaatcacatctaaactctta 183
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatctcgtttttgatgtttttcatgtaggatatttctagtgaatcacatctaaactctta 383
Query: 184 atatcacaatgagttattgaaaacatccaataatatacattgactttaggatatttgtcc 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atatcataatgagttattgaaaacatccaataatatacattgactttaggatatttgtcc 443
Query: 244 cagtgctaaaaattaatgttatctatctttatattattattattattatcattatctgaa 303
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 444 cagtgctaaaaattaatgttatctatc-----attat-attattattatcattatctgaa 497
Query: 304 gaaacaacccaaagaagaaggattttttattagatattttctttatttacattccaaatg 363
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gaaacaacctaaagaagaaggattttttattagatattttctttatttacattccaaatg 557
Query: 364 ttatcccctttcctagtttcccctttggaaatcccctatcctccccctccccctgctccc 423
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 558 ttatcccctttcctagtttccccttcggaaatcccctatcctccccctccccctgctccc 617
Query: 424 caacccacccatttacacttactgggccaggtattcccctatactgagg 472
||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 618 caacccacccatttacacttattgacccaggtattcccctatactgagg 666
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no406_m18.g1 MSMg01no406_m18.g1 CHROMAT_FILE:
MSMg01no406_m18.g1 PHD_FILE: MSMg01no406_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:14 2005
(404 letters)
>mm_chr18_44376565_44377368
Length = 804
Score = 750 bits (388), Expect = 0.0
Identities = 402/410 (98%), Gaps = 6/410 (1%)
Strand = Plus / Minus
Query: 1 cacattaagattcatagaagacttcacttgttgattaggaatttaagaccctggttgaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 cacattaagattcatagaagacttcacttgttgattaggaatttaagaccctggttgaga 695
Query: 61 acattccacttaattgtatgaagtaccatgaaaccattattctttagtacaaatattatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 694 acattccacttaattgtatgaagtaccatgaaaccattattctttagtacaaatattatg 635
Query: 121 ------atatatatatatatatatatatattcaattttttctgtaaacaaagaagttaga 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 atatatatatatatatatatatatatatattcaattttttctgtaaacaaagaagttaga 575
Query: 175 agaaaaataaatatttgaactaccatttcaattgattgtggattacatagatagtttttc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 agaaaaataaatatttgaactaccatttcaattgattgtggattacatagatagtttttc 515
Query: 235 atggtatatcatgatcagtatttggtggagagggtttctgccaccctctacatatgtagc 294
|||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 atggaaaatcatgatcagtatttggtggagagggtttctgccaccctctacatatgtagc 455
Query: 295 agggcctctcctactccccacccctaaaaacagtcctttgtccaaacattctatatgttc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 agggcctctcctactccccacccctaaaaacagtcctttgtccaaacattctatatgttc 395
Query: 355 aagttgactcagacttggaatctgctcaactaaaaagagaaaaagaatag 404
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 aagttgactcagacttggaatctgctcaactaaaaagagaaaaagaatag 345
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 404
Length of database: 804
Length adjustment: 9
Effective length of query: 395
Effective length of database: 795
Effective search space: 314025
Effective search space used: 314025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
