BAC Information

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BAC

Clone NameMSMg01-406P13
Chromosome18 (Build37)
Map Location 48,470,586 - 48,470,991
singlet/doubletsinglet
Overlap genenone
Upstream geneSema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
Downstream geneLOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-406P13.T7 (MSMg01no406_p13.b1)MSMg01-406P13.TJ (MSMg01no406_p13.g1)
ACCAG505040AG505041
length733835
length of high quality
(start - end)
533 (47 - 579)86 (76 - 161)
definitionCHROMAT_FILE: MSMg01no406_p13.b1 PHD_FILE: MSMg01no406_p13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:28 2005CHROMAT_FILE: MSMg01no406_p13.g1 PHD_FILE: MSMg01no406_p13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:22:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCACAGTTTACCATTTTATATGAATATTGTTTTTTAGGAAATTGT
GTGAACAAGAGAAAATTCGGATAATTTTCAATAGTACAATAAAGCAAACA
CATGATAATAAATATCTATTCACATATCTCTATTGCTATATATCTGTATG
ATTTGTGTTAAGTGAGATAATTAGTATATAAATCTTGAACTGTCTGTAGC
TATTTCCTCAGGATAGAAACATTCTAGGATTCTCTCCTAGAGGGAGGTAA
ATATGGCCCTTGGAGGGTAACTAAATTTACAAGGCTCAGGACATACCTGA
AATTTACAAGATTCACAAGCCTCAGTCTTCATGGTTATATCAGAAATAAT
AAATTCTAGGAAGAAAACTCTAATTTCCTAACTGCCTAAAATTATAAGGG
ATAATTGATAGCTTTCCTGAGTTAAGTGTCATTTTATTTTATGCTTCCTG
GTGACACAGTTGTCTTTGAGTCACCTGTTATTCTTATTAAATTAGAATTG
GTTAAAATCAATTTTTTGTTGTGTCATCAGTACTTGAGGTTAAATAAAAG
TTTGTTCACATTTGCCCAAAAAAGTCATACAAGAATTTCCTGTGTGTGTG
TGTGTGTGTGTGTGTGTTTATTTATGTGTGTACAAATATTTCTTTTTTAC
CCTCATCTTATTTGCCTTCCTACTTTTTTATTT
NCCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTGTTGAGAAAATGGGCATGATTC
TAATAGTAAATGTGTGTGTGTGTGTGCATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGCCCCCCCCCCCTCCCCCCCCCCCCCCCCTCCCCC
CCCCTCTCCCCCCCCCTCCCCCTCCCCCCCCCCCCCCCCCCCCCTCCTCT
CCCTCCCCCCCCTCCCCCCTCTCTCCCCCCCCCCCCCCCCTCCTCCCCCC
CTCTCCCCCCACCCCTTTTTTTTTCTTACCCCCCACCCCCCCCCCTCCCC
TCCCTCCCCCCCCTTCCCCCCCCCTTCCTTCCCCTCCCCCCCCCCTCCCC
CCCCTCCCCCTCTTCCCCCCCCTCTTTTCCCCCCCTCCCTCCCCTCCTCC
TCTCCCCCCCCTCTCCCCTCCCCCCCCCCCCCCCCTCCTCCCCCCTCCCC
CCCCCCCCCCCCCCTCCCCCTCCCCTTTCTCCCCCCCTTCTTCCCCCCCC
CCCCTCTCCCCCTTCTACCTCTCCTATCTCTCCCCCCCTCCCCCCCCCCT
CTTTTCTACCCCCTCCTTCCCCTCCTCCCCCTCCCTTCCCCCTCCTTCCC
TCCTCCCTCTCCCCTTCCCCCTCCTCTCCCCCCCCCCCCTCCTTTCCCAC
CTCCTACCCTCCCTCTCCTCCCCCTCTTCTTTTTTTCTCCCCCCCCTCCC
CCCCCCCCCCCTCTCCCCCCCCCTCCCTTCCCCCCCTTTTTCCCCCCCCC
CCCCCCCCCCCCTTCCCTCTCCCCCCCCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no406_p13.b1 MSMg01no406_p13.b1 CHROMAT_FILE:
MSMg01no406_p13.b1 PHD_FILE: MSMg01no406_p13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:28 2005
         (533 letters)



>mm_chr18_48470059_48470991
          Length = 933

 Score =  762 bits (394), Expect = 0.0
 Identities = 403/406 (99%)
 Strand = Plus / Minus

                                                                       
Query: 128 atatctctattgctatatatctgtatgatttgtgttaagtgagataattagtatataaat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 atatctctattgctatatatctgtatgatttgtgttaagtgagataattagtatataaat 874

                                                                       
Query: 188 cttgaactgtctgtagctatttcctcaggatagaaacattctaggattctctcctagagg 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 cttgaactgtctgtagctatttcctcaggatagaaacattctaggattctctcctagagg 814

                                                                       
Query: 248 gaggtaaatatggcccttggagggtaactaaatttacaaggctcaggacatacctgaaat 307
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 813 gaggtaaatatggcccttggagggtaacaaaatttacaaggctcaggacatacctgaaat 754

                                                                       
Query: 308 ttacaagattcacaagcctcagtcttcatggttatatcagaaataataaattctaggaag 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ttacaagattcacaagcctcagtcttcatggttatatcagaaataataaattctaggaag 694

                                                                       
Query: 368 aaaactctaatttcctaactgcctaaaattataagggataattgatagctttcctgagtt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 aaaactctaatttcctaactgcctaaaattataagggataattgatagctttcctgagtt 634

                                                                       
Query: 428 aagtgtcattttattttatgcttcctggtgacacagttgtctttgagtcacctgttattc 487
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 633 atgtgtcattttattttatgcttcctggtgacacagttgcctttgagtcacctgttattc 574

                                                         
Query: 488 ttattaaattagaattggttaaaatcaattttttgttgtgtcatca 533
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttattaaattagaattggttaaaatcaattttttgttgtgtcatca 528


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)