Query= MSMg01no407_c08.b1 MSMg01no407_c08.b1 CHROMAT_FILE:
MSMg01no407_c08.b1 PHD_FILE: MSMg01no407_c08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:42 2005
(571 letters)
>mm_chr18_38393926_38394895
Length = 970
Score = 948 bits (490), Expect = 0.0
Identities = 550/572 (96%), Gaps = 6/572 (1%)
Strand = Plus / Minus
Query: 5 gaattcaagacctaacctacatctgaccagggccttcctgatacactgtaacgtggcaga 64
|||||||||||| |||||||||||| |||||||||| ||||| |||||||| ||||||||
Sbjct: 604 gaattcaagaccaaacctacatctggccagggcctttctgatgcactgtaatgtggcaga 545
Query: 65 atggtatagtaagcacaccagacagaaaaacaggaccaaaaagatggaaagggataaact 124
| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct: 544 acggtatagtaagcacacc-gacaaaaaaacaggaccaaaaagatggaaagggataaact 486
Query: 125 cgccatcagagctctcatggcttaatcagttcttgaaggccttccacttaagatccctac 184
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 485 cgccatcagagctctcatgacttaatcaattcttgaaggccttccacttaagatccctac 426
Query: 185 aatgataaatttcaaattgacttttgagaccaacattgaaactatagcaccacccgtctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatgataaatttcaaattgacttttgagaccaacattgaaactatagcaccacccgtctc 366
Query: 245 cacactgtacgatgacacacaccctggtgagtgaaagtgccggagacaagatgaaagctt 304
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 365 cacactgtacgatgacacacaccctggtgagtgaaagtgccagagacaagatgaaagctt 306
Query: 305 caccctaccaccaccagcaccgtggatgcctgggctcttgaccacttaggatcaattttg 364
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 305 caccctaccaccaccagcaccgtggatgcctggactcttgaccacttaggatcaatttcg 246
Query: 365 ctttactctgagtcattcttgttcatttagttcagtcattctgtagtaggctcccagatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctttactctgagtcattcttgttcatttagttcagtcattctgtagtaggctcccagatc 186
Query: 425 ttatcacaactgacaccatgatggaagtaccattcaggcataaaactcagcacataagcc 484
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttatcacaactgacaccataatggaagtaccattcaggcataaaactcagcacataagcc 126
Query: 485 gggcatggtggcgcacgcctttaatcccagcacttgggaggcagaggcaggcggatttct 544
|||| |||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 125 gggcgtggtggcgcatgcctttaatcccagcactcgggaggcagaggcaggcggatttct 66
Query: 545 gagt----tt-gaggccagcctcgtctacaca 571
|||| || |||||||||||||||||||||
Sbjct: 65 gagttcagttcgaggccagcctcgtctacaca 34
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 571
Length of database: 970
Length adjustment: 10
Effective length of query: 561
Effective length of database: 960
Effective search space: 538560
Effective search space used: 538560
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_c08.g1 MSMg01no407_c08.g1 CHROMAT_FILE:
MSMg01no407_c08.g1 PHD_FILE: MSMg01no407_c08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:42 2005
(474 letters)
>mm_chr18_38220507_38221379
Length = 873
Score = 878 bits (454), Expect = 0.0
Identities = 469/474 (98%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 1 tcttgctataaaagtaggataatatgtatccccagcatcatcatggaattaaattagaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttgctataaaagtaggataatatgtatccccagcatcatcatggaattaaattagaca 260
Query: 61 gttaatattaaaacacctcataaaccataggacgtcgtgttcactctaattcaacattac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttaatattaaaacacctcataaaccataggacgtcgtgttcactctaattcaacattac 320
Query: 121 tttgaggagagctctgagcaaggagcttcgaggacttcagagatattcagagtttgtggt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 tttgaggagagctctgagcaaggagcttcgaggacttcagagatattcagagtttgttgt 380
Query: 181 tctgttcccagatgacctgtgatggagacggggagtggaggcacaaaacaagcagcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgttcccagatgacctgtgatggagacggggagtggaggcacaaaacaagcagcagga 440
Query: 241 accatggagagctccacctacttacatggaagacatggagtgcccgtgtctggtagagga 300
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 441 accatggagagctccacctacttacacggaagacatg-agtgcccgtgtctggtagagga 499
Query: 301 gcctaaaaggccaaagtcaggcttctagatttactgctctgtgggtaaaggtctctgaga 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 500 gcctaaaaggccaaagtcaggcttctatatttactgctctgtgggtaaaggtctctgaga 559
Query: 361 gtgcatatgagttaccttgtggtgacttctggccggctgagtcacttccctctgtcacct 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcgcatatgagttaccttgtggtgacttctggccggctgagtcacttccctctgtcacct 619
Query: 421 ctgaggcaagagaatgcagagacaattgtgagaccatttgaatcagctattcag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctgaggcaagagaatgcagagacaattgtgagaccatttgaatcagctattcag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
