Query= MSMg01no407_e13.b1 MSMg01no407_e13.b1 CHROMAT_FILE:
MSMg01no407_e13.b1 PHD_FILE: MSMg01no407_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:53 2005
(518 letters)
>mm_chr18_61495757_61496674
Length = 918
Score = 843 bits (436), Expect = 0.0
Identities = 509/552 (92%), Gaps = 36/552 (6%)
Strand = Plus / Plus
Query: 1 cctggccccaaaataaaataaaatagccatgttactattttctatacctgaaaaataggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 cctggccccaaaataaaataaaatagccatgttactattttctatacctgaaaaataggg 228
Query: 61 tacaattttgcaccatagacatatacacaactacccacactgcacacacacacacacaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tacaattttgcaccatagacatatacacaactacccacactgcacacacacacacacaca 288
Query: 121 cacacatacacacacatacacacacacacatacacacaca--tacacacacaca------ 172
|||||| ||||||||| ||||| | ||||||||||||||| ||||||||||||
Sbjct: 289 cacacacacacacacacacacatatacacatacacacacacatacacacacacacacata 348
Query: 173 tacaca--cacatacacacacacacataca----------tacacacacatacacacaca 220
|||||| |||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 349 tacacatacacacacacacacacacatacacacacacacatacacacacatacacacaca 408
Query: 221 catacacaca--tacacacacaca----cacacatacacatattcacacacacacacaca 274
|||||||||| |||||||||||| |||||||||||| | ||||||||||||||||
Sbjct: 409 catacacacacatacacacacacatacacacacatacacaca--cacacacacacacaca 466
Query: 275 cacacacacacacacacac--------ttcgatggtggtctaaaggtctttatgaggtta 326
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 467 cacacacacacacacacacacacacacttcgatggtggtctaaaggtctttatgaggtta 526
Query: 327 atttgacccagactgcagactatgcaaccacttctgaagggatctctccatcactctggg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 atttgacccagactgcagactatgcaaccacttctgaagggatctctccatcactctggg 586
Query: 387 tccaaggggcccatgagagcccagctaagtgggtttgcttcatcttaggatagagaacct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 tccaaggggcccatgagagcccagctaagtgggtttgcttcatcttaggatagagaacct 646
Query: 447 gaggtctgagagtaggtaatgcagccctgctgagcaggaatgtgggtccagacttaagct 506
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gaggcctgagagtaggtaatgcagccctgctgagcaggaatgtgggtccagacttaagct 706
Query: 507 caaattccttgt 518
||||||||||||
Sbjct: 707 caaattccttgt 718
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 379
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_e13.g1 MSMg01no407_e13.g1 CHROMAT_FILE:
MSMg01no407_e13.g1 PHD_FILE: MSMg01no407_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:22:53 2005
(451 letters)
>mm_chr18_61668775_61669625
Length = 851
Score = 710 bits (367), Expect = 0.0
Identities = 393/411 (95%), Gaps = 15/411 (3%)
Strand = Plus / Minus
Query: 56 ccccagcggcccttgacctgcctcagtgcgtaagagcattggctgctgttctagagtacc 115
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851 ccccagcggcccttgacctgcctcagtgcgtaagagcattggctgctgttctagagtacc 792
Query: 116 tgggttagattcccagcattcatatggcagctcacaactgtctgtgattccggtttcagg 175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 tgggttagattcccagcattcatatggcagctcacaactgtctgtgattccggtttcagg 732
Query: 176 ggatcagacacccttgcacagacatacat---------------accaatgcacctaaaa 220
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 731 ggatcagacacccttgcacagacatacatgtaggcaaaacacccaccaatgcacctaaaa 672
Query: 221 taaaaataaataaatcattacatgttttttctgataaaaattccaaacccatagaaaact 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671 taaaaataaataaatcattacatgttttttctgataaaaattccaaacccatagaaaact 612
Query: 281 aggatgatatgatgaagattctatctaccacctgaaatgagagttaacacatcaatatct 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 aggatgatatgatgaagattctatctaccacctgaaatgagagttaacacatcaatatct 552
Query: 341 tcttatctatttctatgctaaactatttagaggaagttgatactttctcccatatactct 400
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tcttatctatttttatgctaaactatttagaggaagttgatactttctcccatatactct 492
Query: 401 aaaaattaggctcccatggtacttttacactcacttatttatttagtgtgt 451
||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct: 491 aaaaattaggctcccgtggtacttttacactcatttatttatttagtgtgt 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 851
Length adjustment: 10
Effective length of query: 441
Effective length of database: 841
Effective search space: 370881
Effective search space used: 370881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
