BAC Information

Click to search

BAC

Clone NameMSMg01-407F23
Chromosome18 (Build37)
Map Location 42,857,426 - 43,039,551
singlet/doubletdoublet
Overlap genePpp2r2b
Upstream geneLOC100041988, LOC100041997, Prelid2, Gm851, Sh3rf2, EG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037
Downstream geneLOC100042046, LOC100042051, EG666594, Stk32a, Dpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407F23.T7 (MSMg01no407_f23.b1)MSMg01-407F23.TJ (MSMg01no407_f23.g1)
ACCAG505347AG505348
length743743
length of high quality
(start - end)		535 (48 - 582)448 (80 - 527)
definitionCHROMAT_FILE: MSMg01no407_f23.b1 PHD_FILE: MSMg01no407_f23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:00 2005CHROMAT_FILE: MSMg01no407_f23.g1 PHD_FILE: MSMg01no407_f23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,857,426 - 42,857,954)(43,039,104 - 43,039,551)
sequence
NCCTCTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCAACAGAGCAGAAACCCCTGATTAACTTTCCAGTTTTCTTATCG
TTTTGACAAGAAGAATGATTATATCTGATCTTGTCATACTGATCATTTAC
TTAGTAAGATAGTTCTCTAAGCTCTCTCTTGCTCTATGTGTGTGTATTTG
TGTAAGAGAGAGACAGAGAGATAGAGATAGAGAGACAGAGAAGTCTCACA
AGCCTTTGGTAGAGTTTTCCCTTATGAAGGATAAAGGATGAAGTGGAGCA
TGGGGGTCCTGGATGGACCAAAAGCATGCTGTGAGAATGTTCACAGTCAG
AAAGTCATGGGCCTGGGTGCAAATTCTATTCTTGTTAGACTCCAAGTCCG
AAGCTGTCTGCTGTGACGTCAGTGTTGTGCTTGCTTTTGCCCAACCAGAC
TTCCTTTCTGCTAGTCTTACTGAGTTAATTCTTGATGTATGCTTTGTAAC
ATAAGTGGAAATTTTAGTGTCGGTGAACTCACGGGGTGTGTGTTTTCTAC
CACGTGGTATAACTAACATATAATTATGAANACAGTCCACACATTTCTTT
TGAGCATCTTGCTTGCTCCTCCAGGGTTCTCACAGCATGCCTTGCANGTG
TCCCAAGCCATACTCCAGTCTCTTTGGTAGAATAAAGGTCTAATAAAAGA
ATGTACCCAATAGGAGGCATTTTAAAAAAGGGTTGGTTTTTGT

NNCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTTAAAAACTGGCCAAAAG
GCAAAGAAAAGTAGAAAAACAATCTGCAGCTAAACATCTGTATGCTTGTT
TATGTATATCTGTATATGTAGTATTTAATCTGTCCACGTATAGACAGACG
ATGAACCAGACATCGATTTCCCAAGGGAGCTATGGAATTTTAGAAAATGA
TTCTTTTGTCTTTGCTCTTAGCAATGTTGAGGCTCAACCCCAAGTCTTTG
TCTGTGGGAAATGAGTGATTTTCCTCTCAAGTCTACACTTAGCTCTCCAA
AGATGTTTCTTAGTGTGCCTTTTAAGCTGAAGATGTAGGTGCTGAAGAGA
AAATGGTTAAGAGCACTTACTGTTTTTGCAGGGAACCTAGGTCTGGTTCC
CACCACCCATATTAGGTAGTTCCAGGATCAGGGCATCTGATGCCCCTTTC
TTGCTTCCATGTATGTGGTAAATGCAGACAAGCCAGCACACAGACACAGA
TATTTTTTAAAGTGAGATGGTAAGAAACTTGGACTTATCTTTAAATAATG
CCTGGGGGTGCCTGTGTGAATTGAAGTTAAAATTATTTTTCCCCGGGAAA
GGGGAGTCCATTTTCCTTCTCACCGGGTTTAAGAGGGATCCCCAATGCCG
TTTTTCTTTTTTTTTTCTCCCAATTAAACACTTTCTGGCGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_f23.b1 MSMg01no407_f23.b1 CHROMAT_FILE:
MSMg01no407_f23.b1 PHD_FILE: MSMg01no407_f23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:00 2005
         (535 letters)



>mm_chr18_42857222_42858156
          Length = 935

 Score = 1015 bits (525), Expect = 0.0
 Identities = 528/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacagagcagaaacccctgattaactttccagttttcttatcgttttgacaaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacagagcagaaacccctgattaactttccagttttcttatcgttttgacaaga 264

                                                                       
Query: 65  agaatgattatatctgatcttgtcatactgatcatttacttagtaagatagttctctaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agaatgattatatctgatcttgtcatactgatcatttacttagtaagatagttctctaag 324

                                                                       
Query: 125 ctctctcttgctctatgtgtgtgtatttgtgtaagagagagacagagagatagagataga 184
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctctctctcgctctatgtgtgtgtatttgtgtaagagagagacagagagatagagataga 384

                                                                       
Query: 185 gagacagagaagtctcacaagcctttggtagagttttcccttatgaaggataaaggatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagacagagaagtctcacaagcctttggtagagttttcccttatgaaggataaaggatga 444

                                                                       
Query: 245 agtggagcatgggggtcctggatggaccaaaagcatgctgtgagaatgttcacagtcaga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agtggagcatgggggtcctggatggaccaaaagcatgctgtgagaatgttcacagtcaga 504

                                                                       
Query: 305 aagtcatgggcctgggtgcaaattctattcttgttagactccaagtccgaagctgtctgc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagtcatgggcctgggtgcaaattctattcttgttagactccaagtccgaagctgtctgc 564

                                                                       
Query: 365 tgtgacgtcagtgttgtgcttgcttttgcccaaccagacttcctttctgctagtcttact 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgtgacgtcagtgttgtgcttgcttttgcccaaccagacttcctttctgctagtcttact 624

                                                                       
Query: 425 gagttaattcttgatgtatgctttgtaacataagtggaaattttagtgtcggtgaactca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gagttaattcttgatgtatgctttgtaacataagtggaaattttagtgtcggtgaactca 684

                                                            
Query: 485 cggggtgtgtgttttctaccacgtggtataactaacatataattatgaa 533
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 cggggtgtgtgttttctaccacgtggtataactaacatataattatgaa 733


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_f23.g1 MSMg01no407_f23.g1 CHROMAT_FILE:
MSMg01no407_f23.g1 PHD_FILE: MSMg01no407_f23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:00 2005
         (448 letters)



>mm_chr18_43039044_43039891
          Length = 848

 Score =  835 bits (432), Expect = 0.0
 Identities = 444/448 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacttaaaaactggccaaaaggcaaagaaaagtagaaaaacaatctgcagctaaacatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 aacttaaaaactggccaaaaggcaaagaaaagtagaaaaacaatctgcagctaaacatct 449

                                                                       
Query: 61  gtatgcttgtttatgtatatctgtatatgtagtatttaatctgtccacgtatagacagac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtatgcttgtttatgtatatctgtatatgtagtatttaatctgtccacgtatagacagac 389

                                                                       
Query: 121 gatgaaccagacatcgatttcccaagggagctatggaattttagaaaatgattcttttgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 388 gatgaaccagacatcgatttcccaagggagctatggaattttagaaaatgtttcttttgt 329

                                                                       
Query: 181 ctttgctcttagcaatgttgaggctcaaccccaagtctttgtctgtgggaaatgagtgat 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 328 ctttgctcttagcaatgttgaggctcaaccccaagtctttgcctgtgggaaatgagtgat 269

                                                                       
Query: 241 tttcctctcaagtctacacttagctctccaaagatgtttcttagtgtgccttttaagctg 300
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 268 tttcctctcaagtctacacttagctctccaaagatgttttttagtgtgccttttaagctg 209

                                                                       
Query: 301 aagatgtaggtgctgaagagaaaatggttaagagcacttactgtttttgcagggaaccta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aagatgtaggtgctgaagagaaaatggttaagagcacttactgtttttgcagggaaccta 149

                                                                       
Query: 361 ggtctggttcccaccacccatattaggtagttccaggatcagggcatctgatgccccttt 420
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 148 ggtctggttcccaccacccatattaggtagttccagggtcagggcatctgatgccccttt 89

                                       
Query: 421 cttgcttccatgtatgtggtaaatgcag 448
           ||||||||||||||||||||||||||||
Sbjct: 88  cttgcttccatgtatgtggtaaatgcag 61


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |