BAC Information

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BAC

Clone NameMSMg01-407J06
Chromosome18 (Build37)
Map Location 87,892,686 - 87,909,648
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039872, LOC100039881, LOC665437, LOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1
Downstream geneLOC329008, LOC100039961, LOC100039972, LOC623177, LOC665497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407J06.T7 (MSMg01no407_j06.b1)MSMg01-407J06.TJ (MSMg01no407_j06.g1)
ACCAG505504AG505505
length753757
length of high quality
(start - end)		511 (46 - 556)484 (77 - 560)
definitionCHROMAT_FILE: MSMg01no407_j06.b1 PHD_FILE: MSMg01no407_j06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:15 2005CHROMAT_FILE: MSMg01no407_j06.g1 PHD_FILE: MSMg01no407_j06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,892,686 - 87,893,192)(87,909,165 - 87,909,648)
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTACAAACTTTGGATATTATTTAAATTAAGTTGTACAGAATTCC
TTTGTGTTAGTTGTTGGAGTAGTAATAAGCAGAACAAAGACAGAAAGTCT
ACATTATTGTAATGAGATACAGGACCAATGAATAAAGAAGACTGGGAGAT
ATCTACACAGTCATGCACTTAACTTCTATTTTCTTCTTAATTTACCGTGG
CTATTGTAAATCATATTGTTAGTGTATCCAATAATGTTACAGGAAATGCA
TTTTAGAATCTTGTTTTATTAGTGACGAAATTATGTCATTTTTTATTTAC
ATAGTCAAAGATTTATTACATTTGAAGCTTTTGAAAACAGTATTAGCTTA
ATTTTTGTCATGAATATGTGTATAAAAATGGAAATGACTCAGATGTTTCT
TTTATTGTTTTGAGTTTATAAATAATTATAGCATTTTGTTCTTCTCTTTC
CTCTCCACAAACAGTCACATATACTCTGCCTGCTTGTCTTCAAATCTATG
CTCTTTTTTTTCATTTTATTAATTATTATTTTCTGCATATATGTATAATT
AAACACATATATTCCTCAGTAAAATCTGTTTAGTTCATATGTGTCTTAAT
TAAGGNTTTGGATTCCCTGAACAAACATTACTAANAAACCAAGGGGGAGA
AAAGGGTTATTTTAGGTAATAATTCCCCATGGTTCTTCCTTAAAAATGGA
ACC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGATGCAGAAGCTGCAAATGCA
AAGTGCCAGGAAAAGGATATCTAGAGGAATAGAATGTATACAGTCTGTAC
CTATGATGCCAGTGTAAATAAATATAGACGGAGTGACAGAAGCAAATGAC
GCTGCAATAGAGAAAAGACAGGTGACCAAATTGGGAAGGTTAATGTTGAT
AACAGCTGGTGGTTTAGTAAAAGAGAAGAAATAAATGAAGGCTTTAAGAT
AAATGCAGGCAAATATACAGGGAAGTAATTGAAGTAAATGAAAATGAGTT
TTACACTTGTAAAAGGAGATGTTTTCAACATGGTGTGTCTAGAACGGCAG
TGCCGAAGAATAATGTAAGAGGGAGGTAGGTGGTTCTGCCCAGTATCATT
GAGCATCTGTGTGAGTCAGGCATTTAATCAGGGTGAGCTTTGGGTAATAA
TGACTAGAGAACAGGAGTTTGAATATTTTTCCTAAGAAATGAATGTTTGT
GATAATGGATATATTATCTTGATCTGATTAGTTTGGAATTTAAATATTTG
CTTAATCTTCCTACAAGATCTTATAAACTTATTAATTACCCTGGATTTTA
TATAAACAAAATATTTTAAGTCTGGTTTTTGAACACGGATTTTAAAAAAC
CGGAAAAATATTTTCTCCTTTTAATTATACCAACCCTTTTAATAAAAAAA
ATATTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_j06.b1 MSMg01no407_j06.b1 CHROMAT_FILE:
MSMg01no407_j06.b1 PHD_FILE: MSMg01no407_j06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
         (511 letters)



>mm_chr18_87892482_87893392
          Length = 911

 Score =  965 bits (499), Expect = 0.0
 Identities = 505/507 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtacaaactttggatattatttaaattaagttgtacagaattcctttgtgtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtacaaactttggatattatttaaattaagttgtacagaattcctttgtgtta 264

                                                                       
Query: 65  gttgttggagtagtaataagcagaacaaagacagaaagtctacattattgtaatgagata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gttgttggagtagtaataagcagaacaaagacagaaagtctacattattgtaatgagata 324

                                                                       
Query: 125 caggaccaatgaataaagaagactgggagatatctacacagtcatgcacttaacttctat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caggaccaatgaataaagaagactgggagatatctacacagtcatgcacttaacttctat 384

                                                                       
Query: 185 tttcttcttaatttaccgtggctattgtaaatcatattgttagtgtatccaataatgtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcttcttaatttaccgtggctattgtaaatcatattgttagtgtatccaataatgtta 444

                                                                       
Query: 245 caggaaatgcattttagaatcttgttttattagtgacgaaattatgtcattttttattta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggaaatgcattttagaatcttgttttattagtgacgaaattatgtcattttttattta 504

                                                                       
Query: 305 catagtcaaagatttattacatttgaagcttttgaaaacagtattagcttaatttttgtc 364
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 catagtcaaagatttattacatttaaagcttttgaaaacagtattagcttaatttttgtc 564

                                                                       
Query: 365 atgaatatgtgtataaaaatggaaatgactcagatgtttcttttattgttttgagtttat 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgaatatgtgtataaaaatggaaatgactcagatgtttcttttattgttttgagtttat 624

                                                                       
Query: 425 aaataattatagcattttgttcttctctttcctctccacaaacagtcacatatactctgc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaataattatagcattttgttcttctctttcctctccacaaacagtcacatatactctgc 684

                                      
Query: 485 ctgcttgtcttcaaatctatgctcttt 511
           ||| |||||||||||||||||||||||
Sbjct: 685 ctggttgtcttcaaatctatgctcttt 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_j06.g1 MSMg01no407_j06.g1 CHROMAT_FILE:
MSMg01no407_j06.g1 PHD_FILE: MSMg01no407_j06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:15 2005
         (484 letters)



>mm_chr18_87908965_87909848
          Length = 884

 Score =  905 bits (468), Expect = 0.0
 Identities = 480/484 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagatgcagaagctgcaaatgcaaagtgccaggaaaaggatatctagaggaatagaatg 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 684 acagatgcagaagctgcaaatgcaaagtgccaggaaaaggacatctagaggaatagaatg 625

                                                                       
Query: 61  tatacagtctgtacctatgatgccagtgtaaataaatatagacggagtgacagaagcaaa 120
           |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 624 tatagagtctgtacctatgatgccagtgtaaataaatatagatggagtgacagaagcaaa 565

                                                                       
Query: 121 tgacgctgcaatagagaaaagacaggtgaccaaattgggaaggttaatgttgataacagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgacgctgcaatagagaaaagacaggtgaccaaattgggaaggttaatgttgataacagc 505

                                                                       
Query: 181 tggtggtttagtaaaagagaagaaataaatgaaggctttaagataaatgcaggcaaatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tggtggtttagtaaaagagaagaaataaatgaaggctttaagataaatgcaggcaaatat 445

                                                                       
Query: 241 acagggaagtaattgaagtaaatgaaaatgagttttacacttgtaaaaggagatgttttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acagggaagtaattgaagtaaatgaaaatgagttttacacttgtaaaaggagatgttttc 385

                                                                       
Query: 301 aacatggtgtgtctagaacggcagtgccgaagaataatgtaagagggaggtaggtggttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aacatggtgtgtctagaacggcagtgccgaagaataatgtaagagggaggtaggtggttc 325

                                                                       
Query: 361 tgcccagtatcattgagcatctgtgtgagtcaggcatttaatcagggtgagctttgggta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcccagtatcattgagcatctgtgtgagtcaggcatttaatcagggtgagctttgggta 265

                                                                       
Query: 421 ataatgactagagaacaggagtttgaatatttttcctaagaaatgaatgtttgtgataat 480
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 264 ataatgactagagaacaggagtttgaatatttttccaaagaaatgaatgtttgtgataat 205

               
Query: 481 ggat 484
           ||||
Sbjct: 204 ggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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