BAC Information

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BAC

Clone NameMSMg01-407N15
Chromosome18 (Build37)
Map Location 66,617,807 - 66,762,453
singlet/doubletdoublet
Overlap genePmaip1, LOC100042852
Upstream geneMalt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c, Grp, Rax, Cplx4, Lman1, Ccbe1
Downstream geneMc4r, Gnal, Chmp1b, Mppe1, Impa2, B430212C06Rik, Cidea, Tubb6, Afg3l2, Slmo1, Spire1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-407N15.T7 (MSMg01no407_n15.b1)MSMg01-407N15.TJ (MSMg01no407_n15.g1)
ACCAG505709AG505710
length749760
length of high quality
(start - end)		573 (64 - 636)368 (78 - 445)
definitionCHROMAT_FILE: MSMg01no407_n15.b1 PHD_FILE: MSMg01no407_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:37 2005CHROMAT_FILE: MSMg01no407_n15.g1 PHD_FILE: MSMg01no407_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,761,885 - 66,762,453)(66,617,807 - 66,618,172)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGCAATCTCTTTTGAACCAGGCAGGAAAAGAGCTCATATTCTGTCAA
AATGACAATGTCCAATCACTGCCTATTTTCCAGTTTCTTTTGCCTGATAT
GTCTTTCCAGGAATTGCTTTAGATTACTGTGGAGAATAGATGTAGATTTT
TAATGTTATGCCCATGGCTGAGGGCTTGGCATTACGGAGATCTCCAATAT
CCTTTTTTTATTATTTTTAATTTTCGTCTTCTATGGATATTTGTCATTTC
TTACTTTTTTGTAATCCCTAGGCCACTAGGCTGTGATTTTCACTTCAAAG
AGTAAAAACAACAGTGTGATTTGATTGTACATTTACTATCATTCTTTATC
AAAATTTATGACTACAAAAATATACTTATGTTTGCAAAGTAACTCATTTA
TTCAATATTGATTTATTAAGCATCATTATATACCAAATGCTGGTCCAAGA
TCTGAAGACTAACAACGAATAAAACATAAATCCCTTGGCCATGAGGAACA
TAAGTTTTAGTGAGGTAGGCTGTAGACAAATGGATATTTATTTCTAAAAT
TTAAGATAGATATGGTGTAAAAATAGTCCTGAGAAGATGACACTCAAAGA
AAGATCTGACTTAAGGGAAGTCAAAGCCACAGAGATATCAAGAAATTATC
CTCTCGGGTTTGAGGGAAAGAAGGTGAGGACAGCAAGAAGCCAGACCTT

GATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXANAGTTTCCCCTTCCCTCTTCCT
TTCTGGGGTTCGTCCCTAATTGGCGAAGAATAATAAAGTCGAGGCGCCTG
GCCCCACCCCACCCCACCCCCAACTTTCTTCCCAGTAAGAATTTCTTAGC
CACTCCTGACGGGCGCCACTGCCCCAGCAATGGATACGATCTCTCAAGGG
TTGAAGTTTCCCTCCCACCTTCCTTTTTTTAAGAAAGCACTTTGGGGGTT
GAGCAGGACTCGTCCTCCTTGCGCCCTCCGCCGTAGGTCGGCGCCGCGGC
GATCTGAGGCTTGCCCCGGCAAGTTGCGCTCGGCGGCGTCTCGAGACCTG
CTCCACTTCGCTCGGNTCCCGCGCCGCCGCCGTTCGAAGGGGCGGGGACA
CGGGCGGGATGTCGTCATATGATGTCTCCGGAGAAGTCCCGATAATATGC
GAGAGTCGGTCTGTGGCGCCTGAAATGATAGTATTCCAGCGTTGGCGCTT
CATAATTGAATCTCGTGCGTTTTGTTCATGCTTTTCGTTATTTATCCCCC
CTCCTTCACAACTTTGTTTCAACCCCCGTATCCCTTTTCGAAAACTTTTT
TTTCTTCTCTCTTATCGGTTTATTCGTTTTTTCCACTTCCCAATATATGA
TCATAATTTTTACTCTTACCCTCTCTCCTCCTTTTTTACTCCTGTAGTAA
ACACACGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no407_n15.b1 MSMg01no407_n15.b1 CHROMAT_FILE:
MSMg01no407_n15.b1 PHD_FILE: MSMg01no407_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:37 2005
         (573 letters)



>mm_chr18_66761664_66762636
          Length = 973

 Score = 1062 bits (549), Expect = 0.0
 Identities = 564/569 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   aaccaggcaggaaaagagctcatattctgtcaaaatgacaatgtccaatcactgcctatt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 aaccaggcaggaaaagagctcatattctgtcaaaatgacaatgtccaatcactgcctatt 731

                                                                       
Query: 65  ttccagtttcttttgcctgatatgtctttccaggaattgctttagattactgtggagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 ttccagtttcttttgcctgatatgtctttccaggaattgctttagattactgtggagaat 671

                                                                       
Query: 125 agatgtagatttttaatgttatgcccatggctgagggcttggcattacggagatctccaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 agatgtagatttttaatgttatgcccatggctgagggcttggcattacggagatctccaa 611

                                                                       
Query: 185 tatcctttttttattatttttaattttcgtcttctatggatatttgtcatttcttacttt 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 610 tatcctttttttattatttttaattttcgccttctatggatatttgtcatttcttacttt 551

                                                                       
Query: 245 tttgtaatccctaggccactaggctgtgattttcacttcaaagagtaaaaacaacagtgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttgtaatccctaggccactaggctgtgattttcacttcaaagagtaaaaacaacagtgt 491

                                                                       
Query: 305 gatttgattgtacatttactatcattctttatcaaaatttatgactacaaaaatatactt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gatttgattgtacatttactatcattctttatcaaaatttatgactacaaaaatatactt 431

                                                                       
Query: 365 atgtttgcaaagtaactcatttattcaatattgatttattaagcatcattatataccaaa 424
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atgtttacaaagtaactcgtttattcaatattgatttattaagcatcattatataccaaa 371

                                                                       
Query: 425 tgctggtccaagatctgaagactaacaacgaataaaacataaatcccttggccatgagga 484
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 370 tgctggtccaagatctgaagactaacaatgaataaaacataaatcccttggccatgagga 311

                                                                       
Query: 485 acataagttttagtgaggtaggctgtagacaaatggatatttatttctaaaatttaagat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acataagttttagtgaggtaggctgtagacaaatggatatttatttctaaaatttaagat 251

                                        
Query: 545 agatatggtgtaaaaatagtcctgagaag 573
           ||||||||||||| |||||||||||||||
Sbjct: 250 agatatggtgtaacaatagtcctgagaag 222


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no407_n15.g1 MSMg01no407_n15.g1 CHROMAT_FILE:
MSMg01no407_n15.g1 PHD_FILE: MSMg01no407_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:37 2005
         (368 letters)



>mm_chr18_66617605_66618372
          Length = 768

 Score =  687 bits (355), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   agtttccccttccctcttcctttctggggttcgtccctaattggcgaagaataataaagt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 agtttccccttccctcttcctttctggggttcgtccctaattggcgaagaataataaagt 262

                                                                       
Query: 63  cgaggcgcctggccccaccccaccccacccccaactttcttcccagtaagaatttcttag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgaggcgcctggccccaccccaccccacccccaactttcttcccagtaagaatttcttag 322

                                                                       
Query: 123 ccactcctgacgggcgccactgccccagcaatggatacgatctctcaagggttgaagttt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ccactcctgacgggcgccactgccccagcaatggatacgatctctcaagggttgaagttt 382

                                                                       
Query: 183 ccctcccaccttcctttttttaagaaagcactttgggggttgagcaggactcgtcctcct 242
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 383 ccctcccaccttcctttttttaagaaagcaatttgggggttgagcaggactcgtcctcct 442

                                                                       
Query: 243 tgcgccctccgccgtaggtcggcgccgcggcgatctgaggcttgccccggcaagttgcgc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tgcgccctccgccgtaggtcggcgccgcggcgatctgaggcttgccccggcaagttgcgc 502

                                                                       
Query: 303 tcggcggcgtctcgagacctgctccacttcgctcggntcccgcgccgccgccgttcgaag 362
           |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 503 tcgggggcgtctcgagacctgctccacttcgctcggttcccgcgccgccgccgttcgaag 562

                 
Query: 363 gggcgg 368
           ||||||
Sbjct: 563 gggcgg 568


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 768
Length adjustment: 9
Effective length of query: 359
Effective length of database: 759
Effective search space:   272481
Effective search space used:   272481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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