BAC Information

Click to search

BAC

Clone NameMSMg01-408A08
Chromosome18 (Build37)
Map Location 35,176,737 - 35,177,224
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666296, Ppia-ps18_318.1, Ppia-ps18_319.1, LOC666313, Apc, Srp19, Reep5, Pkd2l2, 2610024E20Rik, Wnt8a, Nme5, 4933408B17Rik, Brd8, Kif20a, Cdc23, Gfra3, Cdc25c, LOC100041859, 2810012G03Rik, LOC100041879, LOC100041887, Jmjd1b, Reep2, Egr1, Etf1, Hspa9, LOC100041377, EG626954
Downstream geneLOC100041951, Ctnna1, Lrrtm2, Sil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-408A08.T7 (MSMg01no408_a08.b1)MSMg01-408A08.TJ (MSMg01no408_a08.g1)
ACCAG505837AG505838
length755769
length of high quality
(start - end)		462 (45 - 506)468 (75 - 542)
definitionCHROMAT_FILE: MSMg01no408_a08.b1 PHD_FILE: MSMg01no408_a08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:51 2005CHROMAT_FILE: MSMg01no408_a08.g1 PHD_FILE: MSMg01no408_a08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:23:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGTCCCATTCGTCCTGATCCTCAGTCCTTTCTCCCCACTCTCCAG
CTCAGGGGAAGTGGGCTTAGGTTATCAATGATTGATTCACGCAGACATCT
GTCCCAACCAGCCCTCACTCTCCTCATACCCAACCCGGACAGGGCATCCT
TGGGCTTGAGTTAGCAGAAACAGTTTTGCAGGTGAAGGATGGTAATGGGT
GATGCAGTGATCCTCCTTGGTCCTGGCACTTCTATTCTTTGAGGTTAAAA
TATTTGTTTCTTCCTGGGTTGCACTCAAGCTGATGTCTGGGAAGCCATTT
ATGCTTAATGTCTCCAACACATTAGCAGCCCCACACGGGGCTCTCTTAAT
GAGACTCCTTAGTGGCAGCTCTGTGAAAGAGCGGGATTGTGTCTGCACCA
GGTGCCCAGCCTCAGCTGGAGAAGTGTCTAGACAGGGCTCTGGTCCCAGG
TGGGTTCCTCGCTACTTAGCGGTTCATCCAGAGTCTACTTACTGTTTGGT
AGCAGTGCCAGCATAGGCTTCCTGCTCATCTTGAAAAGAACTCCCCCCAG
TCTGGACATACCCCAATCTTAATGCCCTTTCCTTAATTAAGAAACGCTGG
TCCTAAGCCATCTAAATTCCCTTAATTTATAAAGGGAAGGGCTCATATCC
TTGGTTTCGAAATTTTAAAACGTGACACCAAGTGCTGTGAGGTATTTTTC
TCATG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCATCACTTGGCAATTAAAAAAAAAA
AAAAGCTGGGCGGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGC
AGAGGCAGGAGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAG
TTCCAGGACAGCCAGGGCTATCCAGAGAAACCCTGTTTCAAAAAGCCAAA
AAAAAAATTTTTTTAATTAATTAAAAAAAAAAGTCCTACTTTGTTCTCTA
TACAATCAAATTCTGTTACCTGCTGGTAGTAACCCTAGGGGACCAAAAGA
AATGACATTTGGCAGATGGATATTTTCCATTTTGCAGAATTTGAAAAACT
AAGATATATACACCATACCACTGATACATACTCAGGGTGTAAATTGGCAA
CTGCTTTAAGTTCTGAAATGCCTAACTGTGTTATTACACACTTATTGGAA
ATAATGGCAATTATGGGGATACCTATACAAATTAAGACTGATAATGGTCC
CTCATATGTATCCCATAAAATGAAATAAATCTTTATATGTTAATATATAA
AGCATGTTACTGGTATTCCCCACAATCCCCCTATTTGAAAGAAGTCATCC
TTCCTTTAAAGAATAGGTTTATTATTTCTAAAGGGTTGAATTTAACTCCC
CTCTAAATTAGAATTATATTATGCCCTTTGTTACTCTCCTCATTTTTCTT
TATTGTTGTTATGATAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no408_a08.b1 MSMg01no408_a08.b1 CHROMAT_FILE:
MSMg01no408_a08.b1 PHD_FILE: MSMg01no408_a08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:51 2005
         (462 letters)



>mm_chr18_35176563_35177424
          Length = 862

 Score =  801 bits (414), Expect = 0.0
 Identities = 455/488 (93%), Gaps = 30/488 (6%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgtcccattcgtcctgatcctcagtcctttctccccactctccagctcagggg 64
           |||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 175 gaattcctgtcccagtggtcctgaccctcagtcctttctccccactctccagctcagggg 234

                                                                       
Query: 65  aagtgggcttaggttatcaatgattgattcacgc-------------------------- 98
           ||||||||||||||||||||||||||||||||||                          
Sbjct: 235 aagtgggcttaggttatcaatgattgattcacgctaaaggtcagtgactttctgacatct 294

                                                                       
Query: 99  ----agacatctgtcccaaccagccctcactctcctcatacccaacccggacagggcatc 154
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttcaagacatctgtcccaaccagccctcactctcctcatacccaacccggacagggcatc 354

                                                                       
Query: 155 cttgggcttgagttagcagaaacagttttgcaggtgaaggatggtaatgggtgatgcagt 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cttgggcttgagttagcagaaacagttttgcaggtgaaggatggtaatgggtgatgcagt 414

                                                                       
Query: 215 gatcctccttggtcctggcacttctattctttgaggttaaaatatttgtttcttcctggg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gatcctccttggtcctggcacttctattctttgaggttaaaatatttgtttcttcctggg 474

                                                                       
Query: 275 ttgcactcaagctgatgtctgggaagccatttatgcttaatgtctccaacacattagcag 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ttgcactcaagctgatgtctgggaagccatttatgcttaatgtctccaacacattagcag 534

                                                                       
Query: 335 ccccacacggggctctcttaatgagactccttagtggcagctctgtgaaagagcgggatt 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ccccacacggggctctcttaatgagactccttagtggcagctctgtgaaagagcgggatt 594

                                                                       
Query: 395 gtgtctgcaccaggtgcccagcctcagctggagaagtgtctagacagggctctggtccca 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gtgtctgcaccaggtgcccagcctcagctggagaagtgtctagacagggctctggtccca 654

                   
Query: 455 ggtgggtt 462
           ||||||||
Sbjct: 655 ggtgggtt 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |